CN184748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20 Identity = 70/211 (33.18%), Postives = 101/211 (47.87%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 + P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++ VW++AG+ F S ++ Q++LMG E R +D + PG GSF L A D + K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP Sbjct: 68 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 253
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20 Identity = 71/211 (33.65%), Postives = 100/211 (47.39%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM--------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 +PP YL G GD+G+D GL DPE+ + E++H+ +AM G G +F +LL G++ VW++AG+ F S ++ Q++LMG E R D I PG GSF L A D + K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 190
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20 Identity = 71/211 (33.65%), Postives = 100/211 (47.39%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 +PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++ W++AG+ F S ++ Q++LMG E R D I PG GSF L A D + K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL++P Sbjct: 44 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPG-----GSFDPL--------------------ALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEP 229
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.587e-20 Identity = 71/211 (33.65%), Postives = 100/211 (47.39%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 + P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++ VW++AG+ F S ++ Q++LMG E R +D + PG GSF L A D + K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.587e-20 Identity = 72/210 (34.29%), Postives = 99/210 (47.14%), Query Frame = 3 Query: 267 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM--------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 PP YL G GD+G+D GL DPE+ + E++H+R+AM G G + +LL G++ VW++AG+ F S ++ Q++LMG E R D I PG GSF L A D + K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP Sbjct: 65 PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20 Identity = 78/254 (30.71%), Postives = 105/254 (41.34%), Query Frame = 3 Query: 240 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE--------------------------------DPES-----------LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842 RP W PG P YLDG+L GD+GFDP GLG+ DP+S L+ + + EL+H R+AM G + + L TG+ W +AG VE S+ TL +++L++G+ E +R + S G FF A D +L EIK+ RLAMV LG VQA+ T GP++N HLSDP H TI Sbjct: 52 RPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFD-------------------PLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 280
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20 Identity = 73/223 (32.74%), Postives = 104/223 (46.64%), Query Frame = 3 Query: 234 QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 + RP +L P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++ VW++AG+ F S ++ Q++LMG E R +D I PG G+F L A D + K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP Sbjct: 52 EDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPG-----GAFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20 Identity = 69/211 (32.70%), Postives = 101/211 (47.87%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 +PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++ VW++AG+ F S ++ Q++LMG E R +D + PG GSF L A D + K+KE+K GRLAM++M G FVQA VT GP++N+ +H++DP Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADP 249
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20 Identity = 77/254 (30.31%), Postives = 104/254 (40.94%), Query Frame = 3 Query: 240 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV-------------------------------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842 RP W PG P +LDG+L GD+GFDP GLG+ E L++ + + EL+H R+AM G L + L TG+ W +AG VE S+ TL +++L++G+ E +R + S G FF A D +L EIK+ RLAMVA LG VQA+ T GP++N HLSDP H TI Sbjct: 55 RPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFD-------------------PLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 283
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20 Identity = 70/211 (33.18%), Postives = 100/211 (47.39%), Query Frame = 3 Query: 264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827 + P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++ VW++ G+ F S ++ Q++LMG E R +D + PG GSF L A+D + K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPG-----GSFDPL--------------------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251 The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bpback to top |