CN184748

Overview
NameCN184748
Unique NameCN184748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 70/211 (33.18%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   68 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 253          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 71/211 (33.65%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM--------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            +PP YL G   GD+G+D  GL  DPE+     + E++H+ +AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R          D I PG     GSF  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 190          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 71/211 (33.65%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            +PP YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++     W++AG+  F                 S   ++  Q++LMG  E  R          D I PG     GSF  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL++P
Sbjct:   44 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPG-----GSFDPL--------------------ALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEP 229          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.587e-20
Identity = 71/211 (33.65%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.587e-20
Identity = 72/210 (34.29%), Postives = 99/210 (47.14%), Query Frame = 3
Query:  267 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM--------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            PP YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +  +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R          D I PG     GSF  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GPI+N+ +HL+DP
Sbjct:   65 PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20
Identity = 78/254 (30.71%), Postives = 105/254 (41.34%), Query Frame = 3
Query:  240 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE--------------------------------DPES-----------LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842
            RP W PG   P YLDG+L GD+GFDP GLG+                                DP+S           L+ + + EL+H R+AM    G +  + L  TG+     W +AG VE    S+           TL  +++L++G+ E +R  +  S       G FF                        A D       +L EIK+ RLAMV  LG  VQA+ T  GP++N   HLSDP H TI
Sbjct:   52 RPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFD-------------------PLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 280          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20
Identity = 73/223 (32.74%), Postives = 104/223 (46.64%), Query Frame = 3
Query:  234 QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + RP +L       P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F ++L   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D I PG     G+F  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GPI+N+ +H++DP
Sbjct:   52 EDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPG-----GAFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20
Identity = 69/211 (32.70%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            +PP YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A D     + K+KE+K GRLAM++M G FVQA VT  GP++N+ +H++DP
Sbjct:   64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADP 249          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 77/254 (30.31%), Postives = 104/254 (40.94%), Query Frame = 3
Query:  240 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV-------------------------------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 842
            RP W PG   P +LDG+L GD+GFDP GLG+  E L++ +                                           + EL+H R+AM    G L  + L  TG+     W +AG VE    S+           TL  +++L++G+ E +R  +  S       G FF                        A D       +L EIK+ RLAMVA LG  VQA+ T  GP++N   HLSDP H TI
Sbjct:   55 RPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFD-------------------PLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 283          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 70/211 (33.18%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++ G+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A+D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPG-----GSFDPL--------------------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB22_PEA1.215e-2033.18Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_CUCSA1.215e-2033.65Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_SOYBN1.215e-2033.65Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2G_SOLLC1.587e-2033.65Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB23_POLMU1.587e-2034.29Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB4B_ARATH2.072e-2030.71Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB23_TOBAC2.072e-2032.74Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_MAIZE2.072e-2032.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4A_ARATH2.707e-2030.31Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB23_NICPL2.707e-2033.18Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bp
GAGGGTTAAATCTTAAATGAATGCGTGGATGCATACCTGAACAAAAAAAT
AGTTGATAGAGAGAGAAACAAAAAATGGCCGTTGCAGTTGGAAGAGGCTT
CCTCCTTCAGCCTTCCTCTTCATCGTCCTTCATTTCTAAGGACGTAAATA
AATCGTCAATAGGTATCACTAGCGCATTTCTGCCTGCCAAACCAGGAACC
ACTCGACGTTATTTGGCAACTGTGGTTCGAGCCCAGCAGCGACCAACATG
GCTCCCTGGAGTCGACCCTCCTCCCTACCTTGATGGAACTTTGGCTGGAG
ATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCGGAGAGCTTAAGG
TGGTATGTGCAGGCGGAGTTGGTGCATGCCCGTTTTGCTATGGCTGGAGT
TGCTGGAATTCTTTTCACAGATTTACTCCGCGTAACAGGGATCCGAGAGT
TGCCAGTCTGGTATGAAGCCGGTGCAGTTGAATTCAAGTTTGCCAGCACA
AGAACTTTGTTCATCGTGCAACTACTATTGATGGGCTTCGCTGAAACCAA
AAGGTATATGGATTACATTAGTCCTGGATCACAAGCCAAAGAGGGATCCT
TCTTTGGATTGGAAGCTTCGCTGGAAGGTTTAGAGCCTGGCTACCCTGGA
GGTCCTCTGCTAAACCCTCTTGGCCTGGCTAAAGATATCAGAAATGCTCG
CGACTGGAAGCTTAAAGAGATTAAGAATGGACGACTTGCAATGGTAGCTA
TGCTTGGTATCTTTGTGCAAGCTTCTGTGACTCATGTTGGTCCAATTGAT
AACATTTTGGAGCACCTCTCCGATCCATGGCACAAAACCATT
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