CN184748

Overview
NameCN184748
Unique NameCN184748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 68/204 (33.33%), Postives = 99/204 (48.53%), Query Frame = 3
Query:  270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV-TGIR-ELPVWYEAGAVEFK-----------FASTRTLFIV---QLLLMGFAETKRY--MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            P YL+G   GD+G+D  GL  DPE+       E++H R+AM G  G +F ++L+   G+  + PVW++AG+  F                +++  V   Q+LLMG  E  R   +D +  G+    G  +                        A D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL DP
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQY------------------FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDP 252          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 70/211 (33.18%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A+D     + K+K IKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPG-----GSFDPL--------------------GLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 70/211 (33.18%), Postives = 99/211 (46.92%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++    VW++ G+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   63 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20
Identity = 70/211 (33.18%), Postives = 99/211 (46.92%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +L    G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   65 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20
Identity = 71/211 (33.65%), Postives = 99/211 (46.92%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G    D+G+D  GL  DPE+     + E++H R+AM G  G +F +L    GI+    VW++AGA  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A+D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   66 EAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPG-----GSFDPL--------------------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20
Identity = 70/209 (33.49%), Postives = 98/209 (46.89%), Query Frame = 3
Query:  270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            P YL G   GD+G+D   +  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AGA  F                 S   ++  Q++LMG  E  R         +D + PG     G+F  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GPI+N+ +HL+DP
Sbjct:   67 PSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPG-----GAFDPL--------------------GLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.343e-19
Identity = 70/201 (34.83%), Postives = 92/201 (45.77%), Query Frame = 3
Query:  270 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            P YL G   GD+G+D  GL  DPE+ + Y + EL+HAR+AM G  G    +LL  +G +    VW++AGA  F       L                VQ++LMG  E      Y   G  A EG                           A D     + K+KEIKNGRLA  +M G FVQA VT  GP+ N+ +HL++P
Sbjct:   54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIE-----GYRVNGGPAGEG------------LDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.343e-19
Identity = 70/211 (33.18%), Postives = 99/211 (46.92%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D   L  DPE+     + E++H R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A D     + K+KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   66 EAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 68/211 (32.23%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            +PP YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +LL   G++     W++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A+  +   + K+KEIKNGRLAM +M G FVQA VT  GP++++ +H++DP
Sbjct:   65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPG-----GSFDPL--------------------GLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADP 250          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19
Identity = 69/211 (32.70%), Postives = 97/211 (45.97%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H R+AM G  G +F +L    G++    VW +AG+  F                 S   ++  Q+LLMG  E  R         +D + PG     GSF  L                      A+D     + K+KE KNGRLAM +M G F+QA VT  GP++N+ +HL DP
Sbjct:   66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPG-----GSFDPL--------------------GLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDP 251          
The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB23_HORVU2.707e-2033.33Chlorophyll a-b binding protein of LHCII type III,... [more]
CB25_TOBAC3.535e-2033.18Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU3.535e-2033.18Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB24_PETSP4.617e-2033.18Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_PETSP4.617e-2033.65Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PINTH4.617e-2033.49Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2_CHLRE1.343e-1934.83Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_PETSP1.343e-1933.18Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_WHEAT2.291e-1932.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP3.909e-1932.70Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bp
GAGGGTTAAATCTTAAATGAATGCGTGGATGCATACCTGAACAAAAAAAT
AGTTGATAGAGAGAGAAACAAAAAATGGCCGTTGCAGTTGGAAGAGGCTT
CCTCCTTCAGCCTTCCTCTTCATCGTCCTTCATTTCTAAGGACGTAAATA
AATCGTCAATAGGTATCACTAGCGCATTTCTGCCTGCCAAACCAGGAACC
ACTCGACGTTATTTGGCAACTGTGGTTCGAGCCCAGCAGCGACCAACATG
GCTCCCTGGAGTCGACCCTCCTCCCTACCTTGATGGAACTTTGGCTGGAG
ATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCGGAGAGCTTAAGG
TGGTATGTGCAGGCGGAGTTGGTGCATGCCCGTTTTGCTATGGCTGGAGT
TGCTGGAATTCTTTTCACAGATTTACTCCGCGTAACAGGGATCCGAGAGT
TGCCAGTCTGGTATGAAGCCGGTGCAGTTGAATTCAAGTTTGCCAGCACA
AGAACTTTGTTCATCGTGCAACTACTATTGATGGGCTTCGCTGAAACCAA
AAGGTATATGGATTACATTAGTCCTGGATCACAAGCCAAAGAGGGATCCT
TCTTTGGATTGGAAGCTTCGCTGGAAGGTTTAGAGCCTGGCTACCCTGGA
GGTCCTCTGCTAAACCCTCTTGGCCTGGCTAAAGATATCAGAAATGCTCG
CGACTGGAAGCTTAAAGAGATTAAGAATGGACGACTTGCAATGGTAGCTA
TGCTTGGTATCTTTGTGCAAGCTTCTGTGACTCATGTTGGTCCAATTGAT
AACATTTTGGAGCACCTCTCCGATCCATGGCACAAAACCATT
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