CN184748

Overview
NameCN184748
Unique NameCN184748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19
Identity = 68/211 (32.23%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKR--------YMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A+      + K+KE+KNGRLAM +M G FV A VT  GP++N+ +HL+DP
Sbjct:   27 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADP 212          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.667e-19
Identity = 68/198 (34.34%), Postives = 93/198 (46.97%), Query Frame = 3
Query:  285 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR-VTGIR--ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            G   GD+G+D  GL  DPE+ + Y + EL+HAR  + G  G++  +LL    GI+  +  +W++AGA  F+      L                VQ++LMG  E      Y   G  A EG                           A D     + K+KEIKNGRLAM A LG FVQA VT  GPI+N+ +HL++P
Sbjct:   78 GEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVE-----GYRVNGGPAGEG------------LDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.667e-19
Identity = 68/211 (32.23%), Postives = 98/211 (46.45%), Query Frame = 3
Query:  264 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRY--------MDYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            + P YL G   GD+G+D  GL  DP +     + E++H R+ M G  G +F +L    G++    VW++AG+  FK                S   ++  Q++LMG  E  R         +D + PG     GSF  L                      A D     + ++KEIKNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   65 EAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPG-----GSFDPL--------------------GLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250          
BLAST of CN184748 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.007e-15
Identity = 66/202 (32.67%), Postives = 93/202 (46.04%), Query Frame = 3
Query:  291 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM--------DYISPGSQAKEGSFFGLEASXXXXXXXXXXXXXXXXXXXAKDIRNARDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 827
            L G+F     GL  DPE+     + E++H+R+AM G  G +F +LL   G++    VW++AG+  F                 S   ++  Q++LMG  E  R          D I PG     GSF  L                      A D     + K+KE+KNGRLAM +M G FVQA VT  GP++N+ +HL+DP
Sbjct:   68 LTGEFH----GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPG-----GSFDPL--------------------GLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 240          
The following BLAST results are available for this feature:
BLAST of CN184748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB21_PEA3.909e-1932.23Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_DUNSA6.667e-1934.34Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PETSP6.667e-1932.23Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_SOYBN2.007e-1532.67Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184748 ID=CN184748; Name=CN184748; organism=Citrus sinensis; type=EST; length=842bp
GAGGGTTAAATCTTAAATGAATGCGTGGATGCATACCTGAACAAAAAAAT
AGTTGATAGAGAGAGAAACAAAAAATGGCCGTTGCAGTTGGAAGAGGCTT
CCTCCTTCAGCCTTCCTCTTCATCGTCCTTCATTTCTAAGGACGTAAATA
AATCGTCAATAGGTATCACTAGCGCATTTCTGCCTGCCAAACCAGGAACC
ACTCGACGTTATTTGGCAACTGTGGTTCGAGCCCAGCAGCGACCAACATG
GCTCCCTGGAGTCGACCCTCCTCCCTACCTTGATGGAACTTTGGCTGGAG
ATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCGGAGAGCTTAAGG
TGGTATGTGCAGGCGGAGTTGGTGCATGCCCGTTTTGCTATGGCTGGAGT
TGCTGGAATTCTTTTCACAGATTTACTCCGCGTAACAGGGATCCGAGAGT
TGCCAGTCTGGTATGAAGCCGGTGCAGTTGAATTCAAGTTTGCCAGCACA
AGAACTTTGTTCATCGTGCAACTACTATTGATGGGCTTCGCTGAAACCAA
AAGGTATATGGATTACATTAGTCCTGGATCACAAGCCAAAGAGGGATCCT
TCTTTGGATTGGAAGCTTCGCTGGAAGGTTTAGAGCCTGGCTACCCTGGA
GGTCCTCTGCTAAACCCTCTTGGCCTGGCTAAAGATATCAGAAATGCTCG
CGACTGGAAGCTTAAAGAGATTAAGAATGGACGACTTGCAATGGTAGCTA
TGCTTGGTATCTTTGTGCAAGCTTCTGTGACTCATGTTGGTCCAATTGAT
AACATTTTGGAGCACCTCTCCGATCCATGGCACAAAACCATT
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