CN184745

Overview
NameCN184745
Unique NameCN184745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184745_ssr25 microsatellite CN184745_ssr25:25..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2439 contig Csv1_Contig2439:1..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184745 vs. ExPASy Swiss-Prot
Match: 1433G_SHEEP (14-3-3 protein gamma (Fragments) OS=Ovis aries GN=YWHAG PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.717e-39
Identity = 71/160 (44.38%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  178 EELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVIKEYRSKIEAELTEICGGILKLLDQKLVPAAAAADSKVFYLKMKGDYHRYLAEFKTGDERKVAAENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNL 657
            E L+ EERNLLSVAYKNV+GARR+SWR++SSIEQK                                                  FYLKMKGDY+RYLAE  TG++R    E++  AY  A +I+   + PTHPIRLGLALN+SVFYYEI    D    L
Sbjct:   12 EPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTS------------------------------------------------FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEITAFDDAIAEL 123          

HSP 2 Score: 58.5362 bits (140), Expect = 2.717e-39
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 3
Query:  669 AFDEAISELDTLGEDSYKDSTLIMQLLRDNL 761
            AFD+AI+ELDTL EDSYKDSTLIMQLLRDNL
Sbjct:  115 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNL 145          
BLAST of CN184745 vs. ExPASy Swiss-Prot
Match: 14338_ORYSJ (Putative 14-3-3-like protein GF14-H OS=Oryza sativa subsp. japonica GN=GF14H PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.572e-39
Identity = 85/196 (43.37%), Postives = 123/196 (62.76%), Query Frame = 1
Query:   76 REENVYMAKLAEQAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVIKEYRSKIEAELTEICGGILKLLDQKLVPAAAAADSKVFYLKMKGDYHRYLAEFKTGDERKVAAENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAK 663
            RE+ V +AKLAEQAERY++MV++M+ +   A    +++ EER L SV +K  IGARRASWRI+ S+EQK  + G+Q  V+ I  Y+ K+E EL  +C  +L ++    +P A + ++ VF+ KMKGDY+RYLAEF TG E+K A + +L AY++                   A  FS+   EI+NSP+RA  +AK
Sbjct:    4 REKVVRLAKLAEQAERYDDMVEFMKTL---ARMDVDMSAEERLLFSVGFKKTIGARRASWRILESLEQKVTA-GDQPGVT-INGYKKKVEDELRAVCNEVLSIIAIHCLPLANSGENVVFFYKMKGDYYRYLAEFSTGTEKKAATDQSLMAYQA----------------WPCAQLFSLL--EIMNSPERASQVAK 176          

HSP 2 Score: 40.0466 bits (92), Expect = 4.572e-39
Identity = 17/32 (53.12%), Postives = 26/32 (81.25%), Query Frame = 3
Query:  666 RAFDEAISELDTLGEDSYKDSTLIMQLLRDNL 761
            +A DEA +E+++ G + YKDS L+MQLL++NL
Sbjct:  177 QALDEATAEINSAGVEGYKDSMLMMQLLKENL 208          
BLAST of CN184745 vs. ExPASy Swiss-Prot
Match: 1433X_MAIZE (14-3-3-like protein (Fragment) OS=Zea mays PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.039e-11
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 3
Query:  666 RAFDEAISELDTLGEDSYKDSTLIMQLLRDNL 761
            +AFDEAISELD+LGE+SYKDSTLIMQLL DNL
Sbjct:   14 QAFDEAISELDSLGEESYKDSTLIMQLLXDNL 45          

HSP 2 Score: 30.8018 bits (68), Expect = 3.039e-11
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1
Query:  625 ILNSPDRACNLAK 663
            ILNSPDRACNLAK
Sbjct:    1 ILNSPDRACNLAK 13          
The following BLAST results are available for this feature:
BLAST of CN184745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433G_SHEEP2.717e-3944.3814-3-3 protein gamma (Fragments) OS=Ovis aries GN=... [more]
14338_ORYSJ4.572e-3943.37Putative 14-3-3-like protein GF14-H OS=Oryza sativ... [more]
1433X_MAIZE3.039e-1187.5014-3-3-like protein (Fragment) OS=Zea mays PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184745 ID=CN184745; Name=CN184745; organism=Citrus sinensis; type=EST; length=761bp
GAGGAAAATCTCCAAAAGAAAACCGAAAGAAAGAAACAAACACAACTGAA
CGGAACAATGGCAGCCCCTTCTCCACGGGAAGAAAACGTATACATGGCGA
AACTTGCGGAGCAAGCCGAGCGGTACGAGGAGATGGTCCAATACATGGAA
AAAGTCGTCGCCTCCGCCTCAACCGGCGAGGAACTCACCGTCGAGGAGCG
CAACCTCCTCTCCGTCGCCTACAAGAACGTCATCGGCGCACGCCGCGCCT
CCTGGCGCATCGTGTCCTCCATCGAGCAGAAGGAGGAGTCGCGAGGCAAC
CAGGACCATGTCTCCGTGATTAAGGAGTACAGATCGAAGATCGAGGCCGA
GTTGACGGAGATCTGTGGCGGGATCTTGAAATTATTGGACCAGAAATTGG
TTCCCGCCGCTGCCGCTGCCGATTCCAAGGTGTTTTATTTGAAGATGAAG
GGAGATTATCATAGGTACTTGGCCGAGTTTAAGACTGGCGATGAGAGGAA
AGTCGCCGCTGAGAATACTCTTAATGCCTATAAATCTGCTCAGGATATTG
CAAATGCTGAACTGGCGCCAACTCATCCTATCCGGCTAGGACTGGCTCTG
AACTTCTCTGTGTTTTACTATGAGATTTTGAACTCTCCCGATAGAGCCTG
TAACCTTGCAAAAACAGGGCCTTTGATGAAGCCATCTCAGAGTTGGATAC
ACTCGGAGAAGATTCATACAAGGATAGCACTTTAATAATGCAGCTTCTTC
GTGATAATCTC
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