CN184742

Overview
NameCN184742
Unique NameCN184742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: HSP78_SCHPO (Heat shock protein 78, mitochondrial OS=Schizosaccharomyces pombe GN=hsp78 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.353e-12
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 2
Query:  380 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            LEEYGT+LT LA++GKLDPV+GR+ +I+R +QIL RRTKNNP L+
Sbjct:   94 LEEYGTDLTALAKQGKLDPVIGREEEIQRTIQILSRRTKNNPALV 138          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPB_RICFE (Chaperone protein clpB OS=Rickettsia felis GN=clpB PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 51/177 (28.81%), Postives = 85/177 (48.02%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMG--INLKDARVEVE-----KIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            E TGI   ++ + G  INL   +V++E     K+   G G    ++  +  A +VLE +   A+  G +++ +             +A ++L N G +   +   +++                   N    L++YG ++T+LAE GKLDP++GR  +I R VQ+L RR KNNP LI
Sbjct:   41 EETGIIQTLINNTGGNINLLKDQVQLELNKIPKVQVEGGG----QVYSSAEALKVLEKASSIAKDSGDSFV-TIERIFEALTYGNTIAGKILTNNGINSKKLAAAILQFRKGKKADTESAE------NSYDALKKYGRDVTELAESGKLDPIIGRDEEIRRTVQVLSRRMKNNPVLI 206          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 53/172 (30.81%), Postives = 84/172 (48.84%), Query Frame = 2
Query:   14 GIAAKVLKSMGINLKDARVEVEKIIGR-----GSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            G  + +L S GIN    R ++ + + R     G+G    ++  +    RVL L  + A++ G N+I S             +A  +L+  GA  +NI   + +M                  ++   L++Y  +LT+ AE+GKLDPV+GR  +I R +Q+L RRTKNNP LI
Sbjct:   44 GSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGG---DVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLAD-ILKATGATTANITQAIEQMRGGESVNDQGAE------DQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI 205          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 53/172 (30.81%), Postives = 84/172 (48.84%), Query Frame = 2
Query:   14 GIAAKVLKSMGINLKDARVEVEKIIGR-----GSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            G  + +L S GIN    R ++ + + R     G+G    ++  +    RVL L  + A++ G N+I S             +A  +L+  GA  +NI   + +M                  ++   L++Y  +LT+ AE+GKLDPV+GR  +I R +Q+L RRTKNNP LI
Sbjct:   44 GSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGG---DVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLAD-ILKAAGATTANITQAIEQMRGGESVNDQGAE------DQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI 205          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 53/172 (30.81%), Postives = 84/172 (48.84%), Query Frame = 2
Query:   14 GIAAKVLKSMGINLKDARVEVEKIIGR-----GSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            G  + +L S GIN    R ++ + + R     G+G    ++  +    RVL L  + A++ G N+I S             +A  +L+  GA  +NI   + +M                  ++   L++Y  +LT+ AE+GKLDPV+GR  +I R +Q+L RRTKNNP LI
Sbjct:   44 GSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGG---DVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLAD-ILKAAGATTANITQAIEQMRGGESVNDQGAE------DQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI 205          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 53/172 (30.81%), Postives = 84/172 (48.84%), Query Frame = 2
Query:   14 GIAAKVLKSMGINLKDARVEVEKIIGR-----GSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            G  + +L S GIN    R ++ + + R     G+G    ++  +    RVL L  + A++ G N+I S             +A  +L+  GA  +NI   + +M                  ++   L++Y  +LT+ AE+GKLDPV+GR  +I R +Q+L RRTKNNP LI
Sbjct:   44 GSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGG---DVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLAD-ILKAAGATTANITQAIEQMRGGESVNDQGAE------DQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI 205          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 48/177 (27.12%), Postives = 77/177 (43.50%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLK-------DARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            +  G+AA ++   G N +       DA  +V K+ G G+G    +I   P   R  + + +   + G +++                A  +L   G  P N+   +  +                  N    L++Y  +LT+ A +GKLDPV+GR  +I R +Q+L RRTKNNP LI
Sbjct:   41 DNEGLAAGLIDRAGGNSRAILKATEDALNKVPKVSGGGAG----QIYLAPELARTFDAAEKAGEKAGDSFVTVERLLLGLTLEKTSEAGTILSKGGVTPQNLNAAIEALRKGRTADSATAE------NAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLI 207          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: HSP78_CANAL (Heat shock protein 78, mitochondrial OS=Candida albicans GN=HSP78 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 2
Query:  374 PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            P LE++G++LT+LA+EGKLDPV+GR  +I R +QIL RRTKNNP LI
Sbjct:   86 PALEKFGSDLTQLAKEGKLDPVIGRDHEIRRTIQILSRRTKNNPVLI 132          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:  365 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            NK  +LE+YG +LT+ A EGKLDPV+GR  +I R +QIL RRTKNNP LI
Sbjct:  159 NKYESLEKYGRDLTQYAREGKLDPVIGRDDEIRRTIQILSRRTKNNPVLI 208          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 51/174 (29.31%), Postives = 78/174 (44.83%), Query Frame = 2
Query:   14 GIAAKVLKSMGIN----LKDARVEVEK---IIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            GI  ++L  + +     L + R +++K   + G G    A     +PR +++ + +  EA++ G +YI +                 + +         RT +  +                  NK   L +Y  +LT LA EGKLDPVVGR  +I RVVQ+L RRTKNNP LI
Sbjct:   39 GIVPRILDKLNVPQAQFLAELRTKIDKFPQVTGGGQKMFA-----SPRLEKIFQAAETEAQEWGDSYISTEHFFMAMLKGGDSELNGLFKKNKVTAEAARTALTEIRGKQKVTDDDPE------NKYEVLNKYARDLTALAAEGKLDPVVGRDEEIRRVVQVLSRRTKNNPVLI 201          
The following BLAST results are available for this feature:
BLAST of CN184742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
HSP78_SCHPO2.353e-1268.89Heat shock protein 78, mitochondrial OS=Schizosacc... [more]
CLPB_RICFE3.073e-1228.81Chaperone protein clpB OS=Rickettsia felis GN=clpB... [more]
CLPB_SHIFL4.013e-1230.81Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_ECOLI4.013e-1230.81Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL64.013e-1230.81Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]
CLPB_ECO574.013e-1230.81Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_BRAJA4.013e-1227.12Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
HSP78_CANAL8.940e-1265.96Heat shock protein 78, mitochondrial OS=Candida al... [more]
CLPB_PLEBO8.940e-1264.00Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB_BDEBA8.940e-1229.31Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184742 ID=CN184742; Name=CN184742; organism=Citrus sinensis; type=EST; length=516bp
GAGGGAAGGCACTGGCATTGCTGCTAAGGTTCTTAAATCAATGGGAATCA
ATCTTAAAGATGCACGTGTAGAAGTGGAGAAGATAATTGGAAGGGGAAGT
GGTTTTGTTGCTGTGGAAATTCCGTTCACTCCTCGTGCAAAGCGTGTCTT
GGAGCTTTCTCTGGAGGAAGCCCGCCAGCTGGGCCATAATTATATTGGGT
CCGAGCATCTTCTCCTTGGGCTTCTTCGTGAAGGGGAAGGTGTAGCAGCC
CGTGTTCTTGAGAATTTAGGTGCTGACCCTAGTAACATCCGCACACAGGT
TATTCGTATGGTTGGTGAGAGCACAGAAGCTGTTGGCGCTGGTGTTGGAG
GAGGAAGCAGTGGCAACAAGATGCCAACACTGGAGGAGTATGGAACAAAT
TTGACTAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTTGGGAGACA
GCCACAAATAGAGCGTGTTGTCCAAATTTTGGGCCGTCGAACTAAGAATA
ATCCATGTCTTATTGG
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