CN184740

Overview
NameCN184740
Unique NameCN184740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11626 contig Csv1_Contig11626:169..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC2_SCHPO (Probable pyruvate decarboxylase C1F8.07c OS=Schizosaccharomyces pombe GN=SPAC1F8.07c PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.822e-47
Identity = 93/206 (45.15%), Postives = 131/206 (63.59%), Query Frame = 3
Query:  225 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATAD 842
            S  T+G +LA+RLVEIG K+ F VPGD+NL LLD L   P L+ +GCCNELN  +AA+GYARS G+   VVT++VG L+  + I GAY+ENLPVI + G PN+ND  +  +LHHT+G  DF  ++   + +TC+   +    DA  +ID AI  A+ + KPVYI I  N+   P P     P+   ++P++S +  LE A +  A+
Sbjct:    7 STMTVGTYLAQRLVEIGIKNHFVVPGDYNLRLLDFLEYYPGLSEIGCCNELNCAFAAEGYARSNGIACAVVTYSVGALTAFDGIGGAYAENLPVILVSGSPNTNDLSSGHLLHHTLGTHDFEYQMEIAKKLTCAAVAIKRAEDAPVMIDHAIRQAILQHKPVYIEIPTNMANQPCP--VPGPISAVISPEISDKESLEKATDIAAE 210          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC_ZYMMO (Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.098e-45
Identity = 93/204 (45.59%), Postives = 127/204 (62.25%), Query Frame = 3
Query:  234 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATADF 845
            T+G +LA RLV+IG K  F+V GD+NL LLD+L+    +  V CCNELN G++A+GYAR++G  A VVT++VG LS  +AI GAY+ENLPVI I G PN+ND+    +LHH +G  D+  +L   + IT +   +    +A   ID  I TAL+E KPVY+ I+CN+  +  P  A  P       + S +  L AAVE T  F
Sbjct:    4 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASM--PCAAPGPASALFNDEASDEASLNAAVEETLKF 205          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC_NEUCR (Pyruvate decarboxylase OS=Neurospora crassa GN=cfp PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.532e-44
Identity = 94/205 (45.85%), Postives = 122/205 (59.51%), Query Frame = 3
Query:  234 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFAR-DPVPFFLAPKVSHQLGLEAAVEATADF 845
            T+G +LA RL ++G +  F VPGD+NL LLD L A P+L  VGC NELN   AA+GYAR+ G+ ACVVT++VG LS  N    AY+ENLP++ I G PN+ND     ILHHT+G PD+T +    + ITC    +    DA  LID A+  A+   KP YI I  NL G    T  R  P+     P  S +  LEAA +  A++
Sbjct:   10 TVGDYLAERLAQVGVRHHFVVPGDYNLILLDKLQAHPDLKEVGCANELNCSLAAEGYARANGISACVVTYSVGALSAFNGTGSAYAENLPLVLISGSPNTNDPSQYHILHHTLGHPDYTYQYEMAKKITCCAVAIPRAIDAPRLIDRALRAAILARKPCYIEIPTNLAG---ATCVRPGPISAITDPITSDKSALEAAAKCAAEY 211          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: PDC3_SCHPO (Probable pyruvate decarboxylase C186.09 OS=Schizosaccharomyces pombe GN=SPAC186.09 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.136e-42
Identity = 90/202 (44.55%), Postives = 123/202 (60.89%), Query Frame = 3
Query:  234 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSHQLGLEAAVEATA 839
            T+G +LA RL + G K  F VPGD+NL LLD L     L  V C NELN  +AA+GYAR+ G+ ACVVT++VG  +  + I GAY+E+LPVI I G PN+ND G++ +LHHT+G  DF+ +    + ITC+   +    +A  LID AI  AL + KPVYI +  N+     P  A  P      P+ S+Q  L+ AV+ +A
Sbjct:   15 TIGHYLAVRLAQAGVKHHFVVPGDYNLGLLDKLQYNNYLEEVNCANELNCAFAAEGYARANGIAACVVTYSVGAFTAFDGIGGAYAEDLPVILISGSPNTNDIGSSHLLHHTLGTHDFSYQYEMAKKITCAAVSIQRPTEAPRLIDYAIKMALLKKKPVYIEVPTNVAS--QPCAAPGPASLITEPETSNQEYLQMAVDISA 214          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: KDC_MYCTU (Alpha-keto-acid decarboxylase OS=Mycobacterium tuberculosis GN=kdc PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.655e-41
Identity = 96/208 (46.15%), Postives = 128/208 (61.54%), Query Frame = 3
Query:  228 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIP-HPTFARDPVPFFLAPKVSHQLGL--EAAVEATAD 842
            V T+G +L  RL E+G  ++F VPGD+NL  LDH++A P +  VG  NELNAGYAADGY R RG+ A V TF VG LSV NAIAG+Y+E++PV+ IVGGP  +  GT R LHH++G  DF   LR  + ITC+QA +       E ID  +S   ++ +P YI +S ++   P  P  A  P+P +        L L  +AA+E  AD
Sbjct:   13 VYTVGDYLLDRLAELGVSEIFGVPGDYNLQFLDHIVAHPTIRWVGSANELNAGYAADGYGRLRGMSAVVTTFGVGELSVTNAIAGSYAEHVPVVHIVGGPTKDAQGTRRALHHSLGDGDFEHFLRISREITCAQANLMPATAGRE-IDRVLSEVREQKRPGYILLSSDVARFPTEPPAA--PLPRYPGGTSPRALSLFTKAAIELIAD 217          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: KDC_MYCTA (Alpha-keto-acid decarboxylase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=kdc PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.655e-41
Identity = 96/208 (46.15%), Postives = 128/208 (61.54%), Query Frame = 3
Query:  228 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIP-HPTFARDPVPFFLAPKVSHQLGL--EAAVEATAD 842
            V T+G +L  RL E+G  ++F VPGD+NL  LDH++A P +  VG  NELNAGYAADGY R RG+ A V TF VG LSV NAIAG+Y+E++PV+ IVGGP  +  GT R LHH++G  DF   LR  + ITC+QA +       E ID  +S   ++ +P YI +S ++   P  P  A  P+P +        L L  +AA+E  AD
Sbjct:   13 VYTVGDYLLDRLAELGVSEIFGVPGDYNLQFLDHIVAHPTIRWVGSANELNAGYAADGYGRLRGMSAVVTTFGVGELSVTNAIAGSYAEHVPVVHIVGGPTKDAQGTRRALHHSLGDGDFEHFLRISREITCAQANLMPATAGRE-IDRVLSEVREQKRPGYILLSSDVARFPTEPPAA--PLPRYPGGTSPRALSLFTKAAIELIAD 217          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: KDC_MYCBP (Alpha-keto-acid decarboxylase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=kdc PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.655e-41
Identity = 96/208 (46.15%), Postives = 128/208 (61.54%), Query Frame = 3
Query:  228 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIP-HPTFARDPVPFFLAPKVSHQLGL--EAAVEATAD 842
            V T+G +L  RL E+G  ++F VPGD+NL  LDH++A P +  VG  NELNAGYAADGY R RG+ A V TF VG LSV NAIAG+Y+E++PV+ IVGGP  +  GT R LHH++G  DF   LR  + ITC+QA +       E ID  +S   ++ +P YI +S ++   P  P  A  P+P +        L L  +AA+E  AD
Sbjct:   13 VYTVGDYLLDRLAELGVSEIFGVPGDYNLQFLDHIVAHPTIRWVGSANELNAGYAADGYGRLRGMSAVVTTFGVGELSVTNAIAGSYAEHVPVVHIVGGPTKDAQGTRRALHHSLGDGDFEHFLRISREITCAQANLMPATAGRE-IDRVLSEVREQKRPGYILLSSDVARFPTEPPAA--PLPRYPGGTSPRALSLFTKAAIELIAD 217          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: KDC_MYCBO (Alpha-keto-acid decarboxylase OS=Mycobacterium bovis GN=kdc PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.655e-41
Identity = 96/208 (46.15%), Postives = 128/208 (61.54%), Query Frame = 3
Query:  228 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIP-HPTFARDPVPFFLAPKVSHQLGL--EAAVEATAD 842
            V T+G +L  RL E+G  ++F VPGD+NL  LDH++A P +  VG  NELNAGYAADGY R RG+ A V TF VG LSV NAIAG+Y+E++PV+ IVGGP  +  GT R LHH++G  DF   LR  + ITC+QA +       E ID  +S   ++ +P YI +S ++   P  P  A  P+P +        L L  +AA+E  AD
Sbjct:   13 VYTVGDYLLDRLAELGVSEIFGVPGDYNLQFLDHIVAHPTIRWVGSANELNAGYAADGYGRLRGMSAVVTTFGVGELSVTNAIAGSYAEHVPVVHIVGGPTKDAQGTRRALHHSLGDGDFEHFLRISREITCAQANLMPATAGRE-IDRVLSEVREQKRPGYILLSSDVARFPTEPPAA--PLPRYPGGTSPRALSLFTKAAIELIAD 217          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: KDC_MYCPA (Alpha-keto-acid decarboxylase OS=Mycobacterium paratuberculosis GN=kdc PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.619e-39
Identity = 84/173 (48.55%), Postives = 111/173 (64.16%), Query Frame = 3
Query:  234 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL--GDAHELIDTAISTALKESKPVYISISCNLPGIP 746
            T+G +L  RL E+G  ++F VPGD+NL  LDH++A P L  VG  NELNAGYAADGY R RG+ A V TF VG LS  NA+AG+Y+E +PV+ IVGGP+ +  GT R LHH++G  DF    R  + ITC+QA   NL    A   ID  +S   ++ +P YI +S ++   P
Sbjct:   13 TVGDYLLDRLAELGVSEIFGVPGDYNLEFLDHIVAHPRLRWVGNANELNAGYAADGYGRLRGMSALVTTFGVGELSAANAVAGSYAEQVPVVHIVGGPSKDAQGTRRALHHSLGDGDFEHFFRVSREITCAQA---NLMPATARREIDRVLSEVREQKRPGYILLSTDVARFP 182          
BLAST of CN184740 vs. ExPASy Swiss-Prot
Match: KDC_MYCA1 (Alpha-keto-acid decarboxylase OS=Mycobacterium avium (strain 104) GN=kdc PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.619e-39
Identity = 84/173 (48.55%), Postives = 111/173 (64.16%), Query Frame = 3
Query:  234 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL--GDAHELIDTAISTALKESKPVYISISCNLPGIP 746
            T+G +L  RL E+G  ++F VPGD+NL  LDH++A P L  VG  NELNAGYAADGY R RG+ A V TF VG LS  NA+AG+Y+E +PV+ IVGGP+ +  GT R LHH++G  DF    R  + ITC+QA   NL    A   ID  +S   ++ +P YI +S ++   P
Sbjct:   13 TVGDYLLDRLAELGVSEIFGVPGDYNLEFLDHIVAHPRLRWVGNANELNAGYAADGYGRLRGMSALVTTFGVGELSAANAVAGSYAEQVPVVHIVGGPSKDAQGTRRALHHSLGDGDFEHFFRVSREITCAQA---NLMPATARREIDRVLSEVREQKRPGYILLSTDVARFP 182          
The following BLAST results are available for this feature:
BLAST of CN184740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PDC2_SCHPO5.822e-4745.15Probable pyruvate decarboxylase C1F8.07c OS=Schizo... [more]
PDC_ZYMMO1.098e-4545.59Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc... [more]
PDC_NEUCR3.532e-4445.85Pyruvate decarboxylase OS=Neurospora crassa GN=cfp... [more]
PDC3_SCHPO1.136e-4244.55Probable pyruvate decarboxylase C186.09 OS=Schizos... [more]
KDC_MYCTU3.655e-4146.15Alpha-keto-acid decarboxylase OS=Mycobacterium tub... [more]
KDC_MYCTA3.655e-4146.15Alpha-keto-acid decarboxylase OS=Mycobacterium tub... [more]
KDC_MYCBP3.655e-4146.15Alpha-keto-acid decarboxylase OS=Mycobacterium bov... [more]
KDC_MYCBO3.655e-4146.15Alpha-keto-acid decarboxylase OS=Mycobacterium bov... [more]
KDC_MYCPA2.619e-3948.55Alpha-keto-acid decarboxylase OS=Mycobacterium par... [more]
KDC_MYCA12.619e-3948.55Alpha-keto-acid decarboxylase OS=Mycobacterium avi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184740 ID=CN184740; Name=CN184740; organism=Citrus sinensis; type=EST; length=846bp
GAGGAGAAACCAGCCCACAGTTCACGAAGACCCAACCAATCACAGATTCA
CAATAGACAATACTCCTATAATAACAGCCCCCACTTGCGCCATCGGTGGA
ACATAAGAAATTGAAAACAGCTTCGTTCTTGTTATACAATATACGCTTAC
ACATGGACACTGCAAACGCAATGGGCTCAACGGGTCAACCCGGCTCAGCT
CCAGCTCCAGTCCGCGGCGGGGCCTCCGTCGGCACGCTAGGCCGGCACCT
GGCGCGGCGGCTGGTGGAGATCGGCGCGAAGGATGTCTTCTCGGTTCCGG
GAGACTTTAACTTGACGCTCTTGGATCATCTCATAGCGGAGCCGGAGTTA
AACTTGGTCGGCTGCTGCAACGAGCTGAACGCCGGATACGCCGCCGACGG
CTACGCACGCTCCAGAGGCGTGGGGGCCTGTGTGGTGACGTTCACTGTGG
GTGGCCTTAGCGTCTTGAACGCCATTGCTGGCGCTTACAGTGAGAATTTG
CCCGTTATCTGTATCGTCGGCGGCCCTAATTCTAATGATTATGGGACTAA
CAGGATCTTGCATCATACCATTGGCTTGCCTGATTTCACCCAAGAACTTA
GATGCTTCCAGGCTATCACCTGTTCTCAGGCTGTGGTGAATAATCTGGGC
GATGCACATGAGCTCATTGACACAGCAATCTCTACTGCTTTGAAGGAAAG
CAAACCGGTTTATATCAGTATAAGCTGTAATTTGCCTGGAATTCCTCATC
CCACATTTGCTAGGGACCCCGTCCCCTTCTTTCTTGCTCCTAAGGTAAGC
CATCAATTAGGATTAGAAGCAGCCGTGGAAGCGACTGCTGATTTTT
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