CN184737

Overview
NameCN184737
Unique NameCN184737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184737 vs. ExPASy Swiss-Prot
Match: OVCA2_XENTR (Ovarian cancer-associated gene 2 protein homolog OS=Xenopus tropicalis GN=ovca2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.288e-13
Identity = 62/225 (27.56%), Postives = 96/225 (42.67%), Query Frame = 1
Query:  178 RILCLHGFRTSGEILKKQIGRWPESILRKLDLDFLDAPF--------PALGKSDVEA------FFDPPYYEWYQRNEDCTQYINFEQSIAYIEDYMVTHGPFDGLLGFSQGAFIAAASPGMQAEGVAFTKVPK--IKFVILIAGAKFLGFKFGQPKLAVNAFSSPVQCPSLHIIGENDFLKEQGM--VLLESFVDPVVIYHSKGHTIPRIDERGQETMLSFIQKF 798
            R+L LHG+R +     ++ G   + +  + DL    AP         P  G  D         +F  P    +   E+       E  +  +       GPFDG+LGFSQGA + A    ++ +G      P+    F IL+AG K L     +       +  P+  PSLH+IGE D +    M   L+  F +PV++ HS GH +P    + ++    F+ KF
Sbjct:   16 RVLALHGYRQNERSFWERTGALRKRLRGRADLITFSAPLLVPDPDAEPGAGDPDSLQDESRGWWFSNPEQNSFDAMEESKTCSGLEAPLDTVAKAFSELGPFDGILGFSQGAALVAIICALKQQG-----DPRFHFDFAILVAGFKSLSTDHAK------HYQQPITVPSLHVIGETDRVISAAMSQELVSHFENPVILMHSGGHYVPACAPQ-KKVYWEFLDKF 228          
BLAST of CN184737 vs. ExPASy Swiss-Prot
Match: U483_CAEBR (UPF0483 protein CBG03338 OS=Caenorhabditis briggsae GN=CBG03338 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 59/221 (26.70%), Postives = 102/221 (46.15%), Query Frame = 1
Query:  172 KPRILCLHGFRTSGEILKKQIGRWPESILRKLDLDFLDAPFPALGKSDVEA----FFDPPYYEWYQRNEDCTQYINFEQSIAYIEDYMVTHGPFDGLLGFSQGA-----FIAAASPGMQAEGVAFTKVPKIKFVILIAGAKFLGFKFGQ-PKLAVNAFSSPVQCPSLHIIGENDFL--KEQGMVLLESF-VDPVVIYHSKGHTIPRIDERGQETMLSFIQK 795
            K RILCLHG+R   +  +++ G   + +    D +F++           E     +F       +   E     + F++S+  +  ++  +GPFDGLLGFSQGA      IA A  G         K+P I+F I  +G   L  K      L +  F      PS+H+ G++D +  + +   L + F ++P+ I H  GH +P + +  +E +  F+++
Sbjct:    6 KLRILCLHGYRQCDQSFRQKTGSTRKLVKALADFEFVNGIHSVAVDEHSETSRAWWFSNADQMSFSSREPTDVSVGFDESVNAVVKFIEDNGPFDGLLGFSQGASMVHLLIAKAQLGE-------IKLPGIRFAIFFSGFLSLSSKHDTLTSLRIKDF------PSMHVFGDSDEIVARPKSEKLADQFDMEPIRIAHEGGHLVPSMSKH-KERITQFLRE 212          
BLAST of CN184737 vs. ExPASy Swiss-Prot
Match: YF36_SCHPO (Uncharacterized hydrolase C22A12.06c OS=Schizosaccharomyces pombe GN=SPAC22A12.06c PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.128e-12
Identity = 58/211 (27.49%), Postives = 97/211 (45.97%), Query Frame = 1
Query:  172 KPRILCLHGFRTSGEILKKQIGRWPESILRKLDLDF------LDAPFPALGKSDVEA----FFDPPYYE---WYQRNEDC-TQYINFEQSIAYIEDYMVTHGPFDGLLGFSQGAFIAAASPGMQA--EGVAFTKVPKIKFVILIAGAKFLGFKFGQPKLAVNA-FSSPVQCPSLHIIGENDFL--KEQGMVLLESFVDPVVIYHSKGHTIP 747
            K +ILC+HG+  SGE+   ++    E +   +D  F      LD     L  S  +A    F   P      W++ NE   T+ +   ++  Y+  Y+  HGPFDG+LGFSQG  +AA    +    +   +   P  +F +  +G       + +P L   A  ++ +  P+LH++G+ D +   E    L+ +  D  V++H   H IP
Sbjct:    6 KSKILCIHGYAESGELFSVKLRALRERMADSVDFYFPTGPIELDKAKDELNGSGFDALSTVFSSSPASHRRGWWRINEYADTKQLEPTKAFEYLASYIKEHGPFDGILGFSQGTNLAANLAALVTIPKYQEYFSQPPFRFALFFSG-------YFRPLLMDGAVHATKLDLPTLHLLGKYDTVLSTETSTTLVRACKDAQVLFHPAAHQIP 209          
The following BLAST results are available for this feature:
BLAST of CN184737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
OVCA2_XENTR4.288e-1327.56Ovarian cancer-associated gene 2 protein homolog O... [more]
U483_CAEBR1.629e-1226.70UPF0483 protein CBG03338 OS=Caenorhabditis briggsa... [more]
YF36_SCHPO2.128e-1227.49Uncharacterized hydrolase C22A12.06c OS=Schizosacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006A03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184737 ID=CN184737; Name=CN184737; organism=Citrus sinensis; type=EST; length=853bp
GAGGGGGTCAATCACCATGGTTGGTCAAAATTAGCAGACAGCTTCGCCCA
TCAAGTAAATTCAGTGAAAATTCCACCACCACGCATGCATACTATTGTTG
CAGCAGCAGAGAAACTTGAGAAGTTCAAAAAAATTAACAGAGAAACCATA
ATGGAAAATGGAATCCCAAAAAAACCCAGAATTTTGTGTCTCCACGGATT
CAGGACAAGCGGCGAGATCCTCAAGAAACAAATAGGAAGATGGCCCGAAT
CCATACTCCGAAAGCTCGATCTTGATTTTCTTGATGCTCCATTTCCTGCG
CTTGGAAAATCAGATGTCGAAGCCTTCTTCGATCCCCCTTACTACGAATG
GTACCAAAGGAATGAGGATTGTACTCAGTATATAAACTTTGAACAGAGCA
TTGCATATATTGAAGATTACATGGTAACGCATGGTCCTTTTGATGGTTTG
CTGGGCTTCTCTCAGGGAGCATTTATAGCAGCTGCTTCACCAGGGATGCA
AGCAGAGGGAGTGGCTTTTACTAAAGTACCAAAGATAAAGTTTGTGATAT
TAATAGCAGGGGCTAAATTCCTGGGATTCAAGTTTGGGCAGCCTAAGCTT
GCGGTTAATGCATTTTCATCCCCAGTCCAGTGCCCATCTCTTCATATTAT
AGGAGAAAATGATTTCTTGAAGGAGCAAGGAATGGTTCTCCTGGAATCGT
TTGTAGACCCTGTTGTGATTTATCACTCCAAGGGGCACACTATCCCGAGA
ATTGATGAGAGAGGCCAAGAGACAATGCTCAGTTTCATCCAGAAATTTCA
AATGATATGATGCAATCATGCACAATGATGATGCCTTTGGTGATTTATTA
CCG
back to top