CN184734

Overview
NameCN184734
Unique NameCN184734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:149..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.345e-63
Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TA NFRALCTGE GIGKSGKPLH+KGS FHR+IP FM QGGDFT  NGTGGESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF+CT KTEWLDGKHVVFG+VVEG+DVVKA+E  GS SG+  K  +IADCGQL
Sbjct:   30 PKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.345e-63
Identity = 112/143 (78.32%), Postives = 124/143 (86.71%), Query Frame = -3
Query:  242 TPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 670
            TPRTA NFRALCTGE GIGK+GK LHYKGS+FHR+IPGFMCQGGDFT  NGTGGESIYGSKF DENF  KHTGPGILSMAN+GP TNGSQFF+CT KT WLDGKHVVFG+VV+G +VVKA+E VGS  G  ++ VVI DCG+L
Sbjct:   29 TPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.138e-62
Identity = 114/142 (80.28%), Postives = 121/142 (85.21%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRALCTGEKGIGKSGKPL YKGSSFHRVI  FMCQGGDFT  NGTGGESIYG+KFADENF  KH G G LSMANAG  TNGSQFF+C A T+WLDGKHVVFG V EGMDVVK +E  GS SG+T KPVVIA+CGQL
Sbjct:   38 PKTAENFRALCTGEKGIGKSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.536e-62
Identity = 109/142 (76.76%), Postives = 121/142 (85.21%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRALCTGEKG+GKSGKPLH+KGS FHR+IP FM QGGDFT  NGTGGESIYG KF DENF +KHTGPG+LSMANAGP TNGSQFF+CT KT WLDGKHVVFG+VVEG+D+V  +E  GSSSG      +IADCGQL
Sbjct:   30 PKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.374e-60
Identity = 107/142 (75.35%), Postives = 119/142 (83.80%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRALCTGEKG GKSGK LH+KGS FHR+IP FM QGGDFT  NGTGGESI+G KF DENF +KHTGPG+LSMAN G  TNGSQFF+CT KT WLDGKHVVFG+V+EGMDVVKAIE  GS  G  + P VIADCG++
Sbjct:   30 PKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRIIPEFMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.178e-59
Identity = 106/142 (74.65%), Postives = 121/142 (85.21%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRAL TGEKG G       YKGSSFHR+IPGFMCQGGDFT  NGTGG+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM +V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:   30 PKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.178e-59
Identity = 106/142 (74.65%), Postives = 121/142 (85.21%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRAL TGEKG G       YKGSSFHR+IPGFMCQGGDFT  NGTGG SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:   30 PKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.178e-59
Identity = 106/142 (74.65%), Postives = 121/142 (85.21%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRAL TGEKG G       YKGSSFHR+IPGFMCQGGDFT  NGTGG SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:   30 PKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.539e-59
Identity = 108/143 (75.52%), Postives = 117/143 (81.82%), Query Frame = -3
Query:  239 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 667
            P+TAENFRALCTGEKG G       YKGS+FHRVIP FMCQ GDFT  NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SGRT+K +VI DCGQLS
Sbjct:   72 PKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 229.18 bits (583), Expect = 1.539e-59
Identity = 106/142 (74.65%), Postives = 121/142 (85.21%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQGGDFT  NGTGG+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   30 PKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
The following BLAST results are available for this feature:
BLAST of CN184734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CYP3_CAEEL1.345e-6378.87Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
CP19C_ARATH1.345e-6378.32Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPIA_DICDI1.138e-6280.28Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
CYP7_CAEEL2.536e-6276.76Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYP2_CAEEL2.374e-6075.35Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
PPIA_RAT1.178e-5974.65Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPIA_MOUSE1.178e-5974.65Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_CRIGR1.178e-5974.65Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
PPIF_HUMAN1.539e-5975.52Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_PONPY1.539e-5974.65Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184734 ID=CN184734; Name=CN184734; organism=Citrus sinensis; type=EST; length=672bp
GAGGCAAGACAAGCCCTATCTTATTTAAAAAGGCAGCTCATAGAAAGACA
TAAAAAACAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAA
CAAGTAACATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACAC
GGCCACATAATAATAGATAACATAATCACCATCACGATCGCGATCAGACG
GCTCGTGATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACC
GCAATCAGCGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCA
CTTTCTCGATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAAC
ACAACGTGCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAA
CTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGG
GGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAG
ATTGATTCGCCTCCGGTTCCGTTTCGGGCGGTGAAGTCTCCCCCCTGGCA
CATGAATCCGGGGATCACACGGTGGAAGGACGAGCCCTTGTAGTGGAGTG
GCTTGCCGGACTTGCCGATGCCTTTCTCGCCGGTGCAGAGGGCGCGGAAG
TTCTCGGCGGTTCGGGGGGTGA
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