CN184734

Overview
NameCN184734
Unique NameCN184734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPIA_HELPY (Peptidyl-prolyl cis-trans isomerase OS=Helicobacter pylori GN=ppiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  302 YKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV--VEGMDVVKAIEK 592
            Y G +FHRVI GF+ QGG      GTGG   +  K    +   KH   G +SMA+AG  T GSQFF+C      LDG+H VFG++   EG+ V+  I++
Sbjct:   55 YNGLNFHRVIAGFVAQGG-CPYGTGTGGPG-HRIKCEVAHNPNKHKR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAEGLSVLDKIKQ 150          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: CYP7_SCHPO (Peptidylprolyl isomerase cyp7 OS=Schizosaccharomyces pombe GN=cyp7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = -3
Query:  335 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV 667
            P+   NF  LC             +Y G+  HRV+P F+ QGGD T   G GGESIYG  FA E   + +    G++ MA      N SQFF+    T   +GK  +FG+VV
Sbjct:   34 PKACRNFIQLCLEG----------YYDGTIVHRVVPEFLIQGGDPTG-TGMGGESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: CWC27_NEUCR (Peptidyl-prolyl isomerase cwc-27 OS=Neurospora crassa GN=cwc-27 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 53/154 (34.42%), Postives = 68/154 (44.16%), Query Frame = -3
Query:  290 TPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIY-------------------------GSKFADENFVK-KHTGPGILSMANAG-PGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS 670
            TP T  NF  L              +Y  + FHR+IPGF+ QGGD  +  G GGESIY                         G  F DE   + K    G+L MAN G P TN SQFF    K + L GK+ +FG+V    D +  + K+G +
Sbjct:   33 TPLTCRNFLQLALDG----------YYDNTIFHRLIPGFIVQGGD-PSGTGHGGESIYDNGALSGDLDPWPMDQRRGKNAGPHGVNFKDEFHSRLKFNRRGLLGMANEGAPDTNSSQFFFTLGKADELTGKNTMFGRVAG--DTIYNLAKIGEA 173          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPI1_BRUSU (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella suis GN=ppi PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  302 YKGSSFHRVIPGFMCQGGDF----------TARNGTGGESI--YGSKFADENFVKKHTGPGILSMANA-GPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEK 592
            Y G +FHRVIPGFM Q GD            AR GTGG +     ++F+ E FV+     G + MA +  P +  SQFF+      +L+G++ V G+VV GMD V  I+K
Sbjct:   67 YNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVR-----GTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSGMDAVDKIKK 171          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPI1_BRUME (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella melitensis GN=ppi PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  302 YKGSSFHRVIPGFMCQGGDF----------TARNGTGGESI--YGSKFADENFVKKHTGPGILSMANA-GPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEK 592
            Y G +FHRVIPGFM Q GD            AR GTGG +     ++F+ E FV+     G + MA +  P +  SQFF+      +L+G++ V G+VV GMD V  I+K
Sbjct:   67 YNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVR-----GTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSGMDAVDKIKK 171          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPI1_BRUAB (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella abortus GN=ppi PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  302 YKGSSFHRVIPGFMCQGGDF----------TARNGTGGESI--YGSKFADENFVKKHTGPGILSMANA-GPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEK 592
            Y G +FHRVIPGFM Q GD            AR GTGG +     ++F+ E FV+     G + MA +  P +  SQFF+      +L+G++ V G+VV GMD V  I+K
Sbjct:   67 YNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVR-----GTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSGMDAVDKIKK 171          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPI1_BRUA2 (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella abortus (strain 2308) GN=ppi PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  302 YKGSSFHRVIPGFMCQGGDF----------TARNGTGGESI--YGSKFADENFVKKHTGPGILSMANA-GPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEK 592
            Y G +FHRVIPGFM Q GD            AR GTGG +     ++F+ E FV+     G + MA +  P +  SQFF+      +L+G++ V G+VV GMD V  I+K
Sbjct:   67 YNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVR-----GTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSGMDAVDKIKK 171          
The following BLAST results are available for this feature:
BLAST of CN184734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
PPIA_HELPY4.539e-1143.43Peptidyl-prolyl cis-trans isomerase OS=Helicobacte... [more]
CYP7_SCHPO5.928e-1138.39Peptidylprolyl isomerase cyp7 OS=Schizosaccharomyc... [more]
CWC27_NEUCR5.928e-1134.42Peptidyl-prolyl isomerase cwc-27 OS=Neurospora cra... [more]
PPI1_BRUSU7.743e-1140.00Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]
PPI1_BRUME7.743e-1140.00Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]
PPI1_BRUAB7.743e-1140.00Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]
PPI1_BRUA27.743e-1140.00Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184734 ID=CN184734; Name=CN184734; organism=Citrus sinensis; type=EST; length=672bp
GAGGCAAGACAAGCCCTATCTTATTTAAAAAGGCAGCTCATAGAAAGACA
TAAAAAACAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAA
CAAGTAACATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACAC
GGCCACATAATAATAGATAACATAATCACCATCACGATCGCGATCAGACG
GCTCGTGATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACC
GCAATCAGCGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCA
CTTTCTCGATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAAC
ACAACGTGCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAA
CTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGG
GGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAG
ATTGATTCGCCTCCGGTTCCGTTTCGGGCGGTGAAGTCTCCCCCCTGGCA
CATGAATCCGGGGATCACACGGTGGAAGGACGAGCCCTTGTAGTGGAGTG
GCTTGCCGGACTTGCCGATGCCTTTCTCGCCGGTGCAGAGGGCGCGGAAG
TTCTCGGCGGTTCGGGGGGTGA
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