CN184734

Overview
NameCN184734
Unique NameCN184734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 4.961e-50
Identity = 95/142 (66.90%), Postives = 107/142 (75.35%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRALCTGEKG G       Y GS FHRVIP FM QGGDFTA NGTGG+SIYG KF DENF K H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+VV+G D+VK +E +GS SG T   +V+A  G+L
Sbjct:   28 PKTAENFRALCTGEKGFG-------YAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.479e-50
Identity = 92/142 (64.79%), Postives = 109/142 (76.76%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            PRTAENFRALCTG++G G       Y    FHRVIP FMCQGGDF   +GTGG+SIYG KF DENF  +H G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +E VGS SG+  +PV I+ CG+L
Sbjct:   44 PRTAENFRALCTGDRGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.084e-48
Identity = 93/142 (65.49%), Postives = 107/142 (75.35%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRALCTGEKG G       YKG  FHR+IP FM QGGD    NG GG+SIYGSKFADENFVKKH   G+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +GMD+VKAIE  G++SG+    +VI + G+L
Sbjct:   48 PKTAENFRALCTGEKGWG-------YKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.722e-48
Identity = 97/146 (66.44%), Postives = 107/146 (73.29%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGSSSG--RTNKPVVIADCGQL 667
            P+TA NF+ LCTG+ G G       YKGSSFHR+IP FM QGGDFT  NGTGG+SIYG KFADENF KKH  PG+LSMANAGP TNGSQFFV T  T WLDG+HVVFG+V   E M VVKA+E  GSSSG  R +K   I DCG L
Sbjct:   85 PKTARNFKELCTGQNGFG-------YKGSSFHRIIPEFMLQGGDFTRGNGTGGKSIYGEKFADENFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCGAL 223          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.555e-48
Identity = 98/143 (68.53%), Postives = 107/143 (74.83%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 667
            P+TAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI  FM QGGDFT   G GGESIYG  F DENF+ KH   G LSMANAG  TNGSQFF+ TA+T  L+G H VFG+VVEG D+VK +E   +  S R     VI DCGQL
Sbjct:   33 PKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 4.643e-48
Identity = 92/143 (64.34%), Postives = 109/143 (76.22%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRALCTGEKG G + GKPLH+KG  FHR+I  FM QGGDF+ +NGTGGESIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   42 PKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 191.045 bits (484), Expect = 4.643e-48
Identity = 94/143 (65.73%), Postives = 108/143 (75.52%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRALCTGEKGIG + GKPLH+KG  FHR+I  FM QGGDF+ +NGTGGESIYG KF DENF  KH   G+LSMANAG  TNGSQFF+ T  T  LDGKHVVFGQV++GM V K +E V     +  K  VIA+CG+L
Sbjct:   42 PKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 7.920e-48
Identity = 92/143 (64.34%), Postives = 109/143 (76.22%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFRALCTGEKG G + GKPLH+KG  FHR+I  FM QGGDF+ +NGTGGESIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   42 PKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.920e-48
Identity = 92/142 (64.79%), Postives = 106/142 (74.65%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TA+NFRALCTGE+G G       YKGS FHRVIP FM QGGDFT  +GTGG+SIYG KFADENF  KH+ PG+LSMANAGP TNGSQFF+ T    WLDG HVVFG+V + M++V  IE +GS+SG     VVI DCG L
Sbjct:   27 PKTAKNFRALCTGEQGFG-------YKGSKFHRVIPQFMLQGGDFTRGDGTGGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCGVL 161          
BLAST of CN184734 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.351e-47
Identity = 90/142 (63.38%), Postives = 105/142 (73.94%), Query Frame = -3
Query:  242 PRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTARNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 667
            P+TAENFR LCT E+G G       YKG SFHRVIP FMCQGGDFT  NGTGG+SIYG KF DENF  KH   G LSMAN+G  TNGSQFF+CT KT+WLD KHVVFG V+ G +VV+ +E+ GS SG  ++ +VI  CG+L
Sbjct:  165 PKTAENFRQLCTHEQGYG-------YKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299          
The following BLAST results are available for this feature:
BLAST of CN184734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CYPH_YEAST4.961e-5066.90Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
PPIE_SCHJA6.479e-5064.79Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
CYPC_YEAST2.084e-4865.49Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
CYPH_NEUCR2.722e-4866.44Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPID_DICDI3.555e-4868.53Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPID_MOUSE4.643e-4864.3440 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_BOVIN4.643e-4865.7340 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPID_RAT7.920e-4864.3440 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPIA2_RHIOR7.920e-4864.79Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
PPIE_DROME1.351e-4763.38Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184734 ID=CN184734; Name=CN184734; organism=Citrus sinensis; type=EST; length=672bp
GAGGCAAGACAAGCCCTATCTTATTTAAAAAGGCAGCTCATAGAAAGACA
TAAAAAACAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAA
CAAGTAACATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACAC
GGCCACATAATAATAGATAACATAATCACCATCACGATCGCGATCAGACG
GCTCGTGATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACC
GCAATCAGCGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCA
CTTTCTCGATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAAC
ACAACGTGCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAA
CTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGG
GGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAG
ATTGATTCGCCTCCGGTTCCGTTTCGGGCGGTGAAGTCTCCCCCCTGGCA
CATGAATCCGGGGATCACACGGTGGAAGGACGAGCCCTTGTAGTGGAGTG
GCTTGCCGGACTTGCCGATGCCTTTCTCGCCGGTGCAGAGGGCGCGGAAG
TTCTCGGCGGTTCGGGGGGTGA
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