CN184728

Overview
NameCN184728
Unique NameCN184728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184728 vs. ExPASy Swiss-Prot
Match: LGUL_NEIMB (Lactoylglutathione lyase OS=Neisseria meningitidis serogroup B GN=gloA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.772e-20
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = -1 
Query:  286 LADLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 651
            + +L +S+ FY+  LGMKLLR  D PE ++TLA +GY +E  +TVLELT+N+    Y  GNAY  +A+  DD Y++ E V    +  GG + R+ G +    T I    DPDG+K   +  +
Sbjct:   10 VGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFVGYGDETDSTVLELTHNWDTERYDLGNAYGHIAVEVDDAYEACERV----KRQGGNVVREAGPMKHGTTVIAFVEDPDGYKIEFIQKK 127
[Close]
BLAST of CN184728 vs. ExPASy Swiss-Prot
Match: LGUL_NEIMA (Lactoylglutathione lyase OS=Neisseria meningitidis serogroup A GN=gloA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.772e-20
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = -1 
Query:  286 LADLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 651
            + +L +S+ FY+  LGMKLLR  D PE ++TLA +GY +E  +TVLELT+N+    Y  GNAY  +A+  DD Y++ E V    +  GG + R+ G +    T I    DPDG+K   +  +
Sbjct:   10 VGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFVGYGDETDSTVLELTHNWDTERYDLGNAYGHIAVEVDDAYEACERV----KRQGGNVVREAGPMKHGTTVIAFVEDPDGYKIEFIQKK 127
[Close]
BLAST of CN184728 vs. ExPASy Swiss-Prot
Match: LGUL_SYNY3 (Probable lactoylglutathione lyase OS=Synechocystis sp. (strain PCC 6803) GN=gloA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = -1 
Query:  295 LADLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 651
            + DL +S++FY   LGM LLR  D P  ++TLA +GY +E +  V+ELT+N+G  +Y  GN +  +A+  +D+Y + + +    ++ GGK+ R+PG +    T I    DPDG+K  L+
Sbjct:   10 VGDLDKSLQFYCDILGMNLLRKKDYPSGEFTLAFVGYGKESENAVIELTHNWGTDKYDLGNGFGHIALGVEDIYSTCDKI----RDKGGKVVREPGPMKHGTTVIAFVEDPDGYKIELI 124
The following BLAST results are available for this feature:
BLAST of CN184728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LGUL_NEIMB1.772e-2040.16Lactoylglutathione lyase OS=Neisseria meningitidis... [more]
LGUL_NEIMA1.772e-2040.16Lactoylglutathione lyase OS=Neisseria meningitidis... [more]
LGUL_SYNY36.733e-2037.82Probable lactoylglutathione lyase OS=Synechocystis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005P20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184728 ID=CN184728; Name=CN184728; organism=Citrus sinensis; type=EST; length=657bp
GCAGGTTAGAAAAACTCACACTTATTTAAATTTTAGACAAAAAAACAAAT
GCTGCCATAGCAACGTAATCCAAATTTAAGCAGTAGATCTCAATTTAATA
ATTCATCACATCACATAGCAGCAAACCACCGATATCGTAACAGGCATATC
GGTGGCTTTCAATACCAGACACGGTAATTTATTCATACAGATAGTACAGT
AGTAGGATTTATTTTGATGCAAGTGTTTTGCAAAACTCCTCCTACCATGA
CATCATTATTCCGACTGAATTTCCTTCAGAAAATCTTCATTGTCAACCAG
GACCGTTTTCCAGCCATCTGGGTCTACGAAAGAGGTGATTTTGGTGTTGA
GTCCAGGGATTGATCCGGGTTGCCGAGTTATCTTCCCTCCAAGCTCTTGG
GTAACCAGGTTGACAACCTCAGCACTTTTGTATACATCATCAGTACTAAT
AGCAACCTGCGCATATGCATTTCCCTTGGTATATTCAGTCACACCATAAT
TATAAGTTAACTCCAGAACAGTAGTCTGATCTTCCTCAGCATATCCAAGC
ATGGCCAGNGTGTACTTGTATTCAGGTTTATCAACTGTTCTTAACAGTTT
CATCCCCAAAGCCTTTTCATAGAACTTGATGGAGCGACCAAGATCGGCCA
ACGCGAA
back to top