CN184719

Overview
NameCN184719
Unique NameCN184719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184719_ssr86 microsatellite CN184719_ssr86:86..97. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2117 contig Csv1_Contig2117:49..334. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS15_CAEEL (40S ribosomal protein S15 OS=Caenorhabditis elegans GN=rps-15 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 3
Query:  102 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKR 281
            L KKRTF+KF +RGVDLD LLDMS ++  KL   R RRR  RGLKRK +ALI K++KAK+
Sbjct:   12 LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKK 71          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS15B_SCHPO (40S ribosomal protein S15-B OS=Schizosaccharomyces pombe GN=rps15b PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 3
Query:  102 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            L KKRTF+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL       I+KLRKAK E
Sbjct:   15 LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSE 75          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS15_YEAST (40S ribosomal protein S15 OS=Saccharomyces cerevisiae GN=RPS15 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  108 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAK 278
            KKR FK  S+RGVDL+ LL+MS ++ VKL  AR RRRF RG+  KP   +KKLR AK
Sbjct:    8 KKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAK 64          
BLAST of CN184719 vs. ExPASy Swiss-Prot
Match: RS15A_SCHPO (40S ribosomal protein S15-A OS=Schizosaccharomyces pombe GN=rps15a PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 3
Query:  102 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKRE 284
            L KKR+F+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL       I+KLRKAK E
Sbjct:   14 LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTE 74          
The following BLAST results are available for this feature:
BLAST of CN184719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS15_CAEEL1.104e-1463.3340S ribosomal protein S15 OS=Caenorhabditis elegan... [more]
RS15B_SCHPO3.006e-1259.0240S ribosomal protein S15-B OS=Schizosaccharomyces... [more]
RS15_YEAST5.127e-1259.6540S ribosomal protein S15 OS=Saccharomyces cerevis... [more]
RS15A_SCHPO8.746e-1257.3840S ribosomal protein S15-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184719 ID=CN184719; Name=CN184719; organism=Citrus sinensis; type=EST; length=286bp
GCGGGAGCCTCTCTTCACACTCGCAGTTGTTTATCTCACCAGTCCAAGCT
CTAACCATGGCGGATGGCGATGCTGATGTTGCGGTGGCGGCGGCGGCAGG
ACTGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATT
TGGACGCTCTTCTTGATATGTCCAATGATGAGCTCGTCAAGCTCTTCAGT
GCACGTGCGCGCAGAAGGTTTCAGAGGGGTTTAAAGAGGAAGCCCATGGC
TTTGATCAAGAAGCTTCGCAAGGCGAAAAGGGAGGC
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