CN184714

Overview
NameCN184714
Unique NameCN184714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5058 contig Csv1_Contig5058:2..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184714 vs. ExPASy Swiss-Prot
Match: Y1385_PYRHO (UPF0051 protein PH1385 OS=Pyrococcus horikoshii GN=PH1385 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 40/128 (31.25%), Postives = 67/128 (52.34%), Query Frame = -2 
Query:  243 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEG 626
            G+  R    SK + +  S    RG  ++ ++A+  +    CD++LL D A   TYP +      A + HEA+  KI E++LFY   RG+  EKA   ++ GF   +  ++P EF  E+ +++ L + G
Sbjct:  319 GEGGRGINASKSVIMDESTVITRG--KIVAEAKKTKGHISCDALLLSDKARMETYPGLVSLVDEAELSHEAAIGKIKEEELFYLMSRGLSEEKATQLIVKGFVEPMLKDIPIEFVVEIKKIIELAVSG 444
The following BLAST results are available for this feature:
BLAST of CN184714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
Y1385_PYRHO1.461e-1331.25UPF0051 protein PH1385 OS=Pyrococcus horikoshii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184714 ID=CN184714; Name=CN184714; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTCCCGAATAAATTCCATTAAAATTACATGTTGTTCTTGAAATA
AACAAGTATGTACAAAGCTGCAAACATGTAGTGTGATACTACTTTTAGAA
CATGTTTATTTAAGTTTACAAGATAAACAGTACACGTCCCAACATTATGC
ATTTACAGCCTTTCATAATCTGGAACTCACAGATGTATCTAAACTTTTGT
AGATAAACTTGATACCAAAATTCCTTCCCTCTAACCTACTGATCCCTCGA
GTTTCAAACTCATGAGTTGGTTCACCTCAGCACCAAACTCATCAGGCAGC
TCATTGAACACATCTCGGCAGAATCCAGAAATCATGGCAGCCATAGCCTT
CTCATAGTCAATTCCCCTCTGCTGAAAGTAGAAAAGCTGGTCTTCACCAA
TTTTTGAGGTGCTGGCTTCGTGTTCAACACGAGCGGTAGGATTCTTCACC
TGGATGTAAGGATAGGTGTTGGCGGCAGCAGTGTCACCGAGAAGCATTGA
GTCACACTGCGAGGAGTTTCGAGCATTCTCAGCCTTTGACTGTACCTGAA
CAAGCCCTCTATAACAATTTCTTGAGTTCCCAACTGAAATACCCTTAGAA
ATAATCCGACTCCTCGTATTCTTCCCC
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