CN184708

Overview
NameCN184708
Unique NameCN184708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.432e-17
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = -2
Query:  177 AGVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 362
            +GVRSL  AA TT  R+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:   54 SGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          

HSP 2 Score: 34.2686 bits (77), Expect = 1.432e-17
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQV  ++ PC+ + R GG  P   CCSG
Sbjct:   28 CGQVNSAVGPCLTYAR-GGAGPSAACCSG 55          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.432e-17
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = -2
Query:  177 AGVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 362
            +GVRSL  AA TT  R+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:   54 SGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          

HSP 2 Score: 34.2686 bits (77), Expect = 1.432e-17
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQV  ++ PC+ + R GG  P   CCSG
Sbjct:   28 CGQVNSAVGPCLTYAR-GGAGPSAACCSG 55          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.441e-17
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = -2
Query:  174 AGVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 362
            AGVR+LN  A+TTP RQ ACNCLK       G+   + AG+P +CGV IPY I   TDC++VR
Sbjct:   51 AGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          

HSP 2 Score: 33.113 bits (74), Expect = 1.441e-17
Identity = 14/29 (48.28%), Postives = 17/29 (58.62%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQV   L  C+ + R GG   PP CC+G
Sbjct:   25 CGQVDSDLTSCLGYARKGGVI-PPGCCAG 52          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.626e-17
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            G++SLN AA+TTPVRQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   59 GIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.626e-17
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            G++SLN AA+TTPVRQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   55 GIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.853e-17
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = -2
Query:  177 AGVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 362
            +GV+ L GAA++T  +QAAC CLK    +I+GI     +G+P +CGV +P+ IS STDC++V
Sbjct:   56 SGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          

HSP 2 Score: 41.2022 bits (95), Expect = 1.853e-17
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQV+ +L+PCI + R  G  PP  CCSG
Sbjct:   29 CGQVSSALSPCISYARGNGAKPPVACCSG 57          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.874e-17
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = -2
Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            GV+ L G A+TT  RQAAC CLK A  +   +    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   53 GVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          

HSP 2 Score: 36.5798 bits (83), Expect = 1.874e-17
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQVT +LAPC+P+L   G  P   CC G
Sbjct:   27 CGQVTSTLAPCLPYLMNRG--PLGGCCGG 53          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-17
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = -2
Query:  177 AGVRSLNGAARTTPVRQAACNC-LKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 362
            +GVRSLN AARTT  R+AACNC LK A   + G+    A+ +P +CGVR+PY IS S DCSRV
Sbjct:   31 SGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          

HSP 2 Score: 32.3426 bits (72), Expect = 4.168e-17
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQV+ ++ PC+ + R  G  P   C SG
Sbjct:    4 CGQVSSAIGPCLAYARGAGAAPSASCQSG 32          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.731e-17
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            G+R++N  ARTTP RQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   56 GIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.002e-17
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = -2
Query:  177 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 359
            GVR LN AA+TTP RQ AC CLK        I  N A  LP +CG+ I YKI+P+ DCS++
Sbjct:   55 GVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          

HSP 2 Score: 38.1206 bits (87), Expect = 9.002e-17
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQVT  L PC  +L  GG   PP CC+G
Sbjct:   28 CGQVTSGLVPCFGYLAAGGPV-PPACCNG 55          
The following BLAST results are available for this feature:
BLAST of CN184708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
NLTP1_ORYSJ1.432e-1758.06Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.432e-1758.06Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
SCA_LILLO1.441e-1753.97Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP2_GOSHI1.626e-1764.52Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI1.626e-1764.52Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP3_HORVU1.853e-1748.39Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP2_SOLCI1.874e-1758.06Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP_ELECO4.168e-1758.73Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP1_PRUDU4.731e-1759.68Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_GERHY9.002e-1752.46Non-specific lipid-transfer protein OS=Gerbera hyb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184708 ID=CN184708; Name=CN184708; organism=Citrus sinensis; type=EST; length=444bp
GCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACAT
GAGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACA
TAGATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGT
CACAGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGGG
GCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGG
CAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCAG
TTGCATGCAGCTTGGCGGACAGGGGTGGTTCTGGCGGCGCCGTTGAGAGA
CCTGACGCCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTC
AAGAAAGGGATGCATGGAGCCAAGGAGGGTGTCACCTGCCCGCA
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