CN184708

Overview
NameCN184708
Unique NameCN184708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 6.699e-13
Identity = 22/62 (35.48%), Postives = 38/62 (61.29%), Query Frame = -2
Query:  177 AGVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 362
            AG + L GA RT   R+ AC C K A   ++ ++P++A+ LP +CG+     I+P+ +C+ +
Sbjct:   55 AGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          

HSP 2 Score: 42.3578 bits (98), Expect = 6.699e-13
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            C  VT +L PC+P+LR+GG+ P P CC+G
Sbjct:   29 CNDVTGNLTPCLPYLRSGGK-PTPACCAG 56          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.070e-13
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = -2
Query:  174 LHASLS*ELEGVFLHRHAVAGVRSLNGAARTTPVRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 419
            L A +   L+G  +     +GV++LN  A+TTP RQ ACNC++   RA G+  G+    AAG+P  CGV IPYKIS ST+C  VR
Sbjct:   36 LAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS--GLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.155e-12
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = -2
Query:  177 AGVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 362
            AGV++L   A T+  R+AAC C+K A      IK + A+ LP +CGV I   IS +T+C  +
Sbjct:   30 AGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          

HSP 2 Score: 40.0466 bits (92), Expect = 1.155e-12
Identity = 18/31 (58.06%), Postives = 19/31 (61.29%), Query Frame = -1
Query:  352 CGQVTPSLAPCIPFLRTGGRFPPPPCCSGRQ 444
            CGQV  SLA CIPFL  G   P   CC+G Q
Sbjct:    3 CGQVNSSLASCIPFLTGGVASPSASCCAGVQ 33          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.202e-12
Identity = 27/61 (44.26%), Postives = 34/61 (55.74%), Query Frame = -2
Query:  177 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 359
            G+ SL  AA     RQ ACNCLK    TI GI  + A  LP++CGV I    S + DC+ +
Sbjct:   58 GLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          

HSP 2 Score: 36.1946 bits (82), Expect = 3.202e-12
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            C QV   LA C+P+L+ GG  P P CC+G
Sbjct:   31 CPQVNMYLAQCLPYLKAGGN-PSPMCCNG 58          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.538e-11
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = -2
Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIR-GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            GV +L   A TTP RQ AC CL+ A   +  G+    AAGLPS C V IPYKIS ST+C+ VR
Sbjct:   56 GVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          

HSP 2 Score: 25.0238 bits (53), Expect = 1.538e-11
Identity = 12/29 (41.38%), Postives = 15/29 (51.72%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CG V  +LA CI +L  G       CC+G
Sbjct:   29 CGTVNGNLAGCIAYLTRGAPL-TQGCCNG 56          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 4.439e-11
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = -2
Query:  177 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 359
            GV++L+  AR+   RQ+ACNCLK     I  +  + A  +P +CGV +PY IS + DCSRV
Sbjct:   53 GVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          

HSP 2 Score: 27.335 bits (59), Expect = 4.439e-11
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CG V   + PC+ +++ GG  P   CC G
Sbjct:   26 CGHVDSLVRPCLSYVQ-GGPGPSGQCCDG 53          
BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 9.530e-11
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = -2
Query:  183 GVRSLNGAARTTPVRQAACNCLKRAYGTI-RGIKPNVAAGLPSQCGVRIPY--KISPSTDCS 359
            GVR LNG   TT  R+ AC C+K A   +  G+  + AAG+P +CG++IPY  +I  +T C+
Sbjct:   58 GVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          

HSP 2 Score: 33.8834 bits (76), Expect = 9.530e-11
Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = -1
Query:  358 CGQVTPSLAPCIPFLRTGG-RFPPPPCCSG 444
            CG+V  +L PC  +L  GG   P P CC+G
Sbjct:   29 CGEVNSNLKPCTGYLTNGGITSPGPQCCNG 58          
The following BLAST results are available for this feature:
BLAST of CN184708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
NLTP1_HELAN6.699e-1335.48Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP1_ARATH7.070e-1347.06Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTPA_RICCO1.155e-1241.94Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTPB_ARATH3.202e-1244.26Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP2_ARATH1.538e-1153.97Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP1_WHEAT4.439e-1145.90Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP7_ARATH9.530e-1143.55Non-specific lipid-transfer protein 7 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184708 ID=CN184708; Name=CN184708; organism=Citrus sinensis; type=EST; length=444bp
GCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACAT
GAGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACA
TAGATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGT
CACAGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGGG
GCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGG
CAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCAG
TTGCATGCAGCTTGGCGGACAGGGGTGGTTCTGGCGGCGCCGTTGAGAGA
CCTGACGCCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTC
AAGAAAGGGATGCATGGAGCCAAGGAGGGTGTCACCTGCCCGCA
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