CN184703

Overview
NameCN184703
Unique NameCN184703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 87/130 (66.92%), Postives = 104/130 (80.00%), Query Frame = 2
Query:    8 ALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            AL N+NGGWCNPPL+HFDMA+PA+ +I  YR GIVP+ F+R+ C KKGG+RF +NG  YF LV I NVGGAG + SVSIKGSKTGW AMSRNWG NWQSN+YL+GQ+LSF +T +DG T    NVVP +W
Sbjct:  111 ALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSW 240          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.543e-49
Identity = 85/124 (68.55%), Postives = 104/124 (83.87%), Query Frame = 2
Query:   26 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            GG C+PP  HFD+++P + +IA Y++GI+P+ +RR+ C + GGIRFT+NGHSYFNLVL+TNVGGAGDVHSVS+KGS+T WQ MSRNWGQNWQSNSYLNGQSLSF +T SD R+V S NV P  W
Sbjct:  119 GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTW 242          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.933e-49
Identity = 86/130 (66.15%), Postives = 105/130 (80.77%), Query Frame = 2
Query:    8 ALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            ALS D GGWCNPP +HFDM++PA+  IA YRAGIVP+++RR+PC + GGIRF VNGHSYF LVL+TNVGG+G V  + IKGS TGW AMSRNWG NWQSN+ L+GQ+LSF++ A DGR VT+ +V P  W
Sbjct:  109 ALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGW 238          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.846e-48
Identity = 83/130 (63.85%), Postives = 104/130 (80.00%), Query Frame = 2
Query:    8 ALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            AL +++GGWCNPP QHFDM++PA+  IA Y+AGIVP++++R+PC + GGIRF ++GH YF LV +TNVGG+G V  +SIKGS TGW AMSRNWG NWQSN+YL GQSLSF +   DGR VT+ NV P NW
Sbjct:  113 ALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNW 242          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.023e-48
Identity = 82/128 (64.06%), Postives = 104/128 (81.25%), Query Frame = 2
Query:   14 SNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            SND GGWCNPP QHFDMA+PA+ QI  YR GIVP++F+R+ C +KGG+RFT+NG+SYF LVLITNVGG G + SV IKG+KTGW  MSRNWG NWQ+N+YLN Q++SF +T++ G+T+   +V P NW
Sbjct:  111 SND-GGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNW 237          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.252e-47
Identity = 83/130 (63.85%), Postives = 101/130 (77.69%), Query Frame = 2
Query:    8 ALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            A  +D GGWCNPP +HFDM++PA+  IA Y+AGIVP++F+R+PC K GGIRFT++G  YF LV + NVGG+G V  VSIKGSKT W AMSRNWGQNWQSN+YLN QSLSF++   D R VT  N+ P NW
Sbjct:  107 AKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNW 236          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.333e-45
Identity = 81/131 (61.83%), Postives = 104/131 (79.39%), Query Frame = 2
Query:    8 ALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            A ++DNGGWCNPP  HFDMA+PAFL IA+Y+AGIVPI ++++ C + GG+RFT+NG +YF LVLI+NV G G++  V IKGSK+  W+ MSRNWG N+QSN+YLNGQSLSF++  SDG    + NVVP NW
Sbjct:  113 AQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNW 243          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 79/132 (59.85%), Postives = 103/132 (78.03%), Query Frame = 2
Query:    8 ALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK--TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            AL +D+GGWCNPP  HFDMA+PA+ +I  YR GIVP++FRR+PC ++GG+RFTV G  YF LVL+TNV  AG V S+ ++GS+   GW AMSRNWG NWQS +YL+GQ LSF++TA+DG+T+    VVP +W
Sbjct:  119 ALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSW 250          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.369e-44
Identity = 77/130 (59.23%), Postives = 96/130 (73.85%), Query Frame = 2
Query:   11 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            L +DNGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NGH YFNLVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ LSF++T  DG+T+   N+VP  W
Sbjct:  136 LPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 265          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.747e-44
Identity = 77/129 (59.69%), Postives = 102/129 (79.07%), Query Frame = 2
Query:   14 SNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            SNDNGGWCNPP +HFD++ PAFLQIAQ +AGIVPIS+RR+PC K GGIR+T+ G+ YFNLV+++NVGGAGDV  +S+KG+K   W  + RNWGQ WQ++  L G+SL+F++   D R  TS +V+P +W
Sbjct:  128 SNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDW 256          
The following BLAST results are available for this feature:
BLAST of CN184703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP11_ARATH2.663e-4966.92Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA5_ARATH4.543e-4968.55Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA8_ORYSJ5.933e-4966.15Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ORYSJ3.846e-4863.85Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP12_ORYSJ5.023e-4864.06Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP33_ORYSJ4.252e-4763.85Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH2.333e-4561.83Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP29_ORYSJ3.980e-4559.85Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ3.369e-4459.23Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ5.747e-4459.69Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184703 ID=CN184703; Name=CN184703; organism=Citrus sinensis; type=EST; length=697bp
GAGGCTTGCCCTGTCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCC
AGCACTTTGACATGGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGC
GCCGGTATCGTCCCAATTTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGG
AGGAATAAGGTTTACCGTCAATGGACACTCATACTTCAACCTGGTTTTGA
TCACAAATGTCGGAGGAGCAGGAGATGTACATTCAGTATCAATCAAGGGT
TCAAAGACTGGATGGCAAGCAATGTCAAGGAACTGGGGCCAAAATTGGCA
GAGCAATTCTTATCTTAACGGCCAAAGTCTTTCTTTCCAATTGACAGCCA
GTGACGGCAGGACTGTGACTAGCAACAATGTTGTGCCTGGAAATTGGCAA
TTTGGGCAAACCTTTGAGGGTGGTCAGTTTTAGATTTTAAAAAAGTGAAT
CAGAATTTGTATATTTAATTGAATTTGGCACTGTTTGTGAGGGAGGAAGG
GTGAGAATAGGGGTAGGTGAGGCTCAGGCCTGGCCGATGTGGCCTGTCTT
GTTGCTGTGGTGGTCTGTTGGCACCCGCTAGGCCTCTATAAATAGAAATG
ATTGTGTTCTATATATAGTTATTACTTCAATTGAATGAACGGGTATAATT
TCATTCAGCGTTGTGATTTCTGGTTATCATTTGAGACATCAGTTAAA
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