CN184703

Overview
NameCN184703
Unique NameCN184703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.263e-39
Identity = 68/125 (54.40%), Postives = 99/125 (79.20%), Query Frame = 2
Query:   26 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 397
            GGWCNPP  HFDMA+PAF+++A +RAGI+P+++RR+PC + GG+RF   G+SY+ L+ + NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L GQSLSF++T+ + G T+ + NV P NW
Sbjct:  125 GGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANW 249          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.263e-39
Identity = 70/130 (53.85%), Postives = 95/130 (73.08%), Query Frame = 2
Query:    8 ALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            AL +D GGWCNPP +HFDM++PA+ +I  YRAGIVP+ +RR+ C ++GG+RFTV G  +F LVL+ NV G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ LSF +T + G+ +   +V P  W
Sbjct:  112 ALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.263e-39
Identity = 69/122 (56.56%), Postives = 92/122 (75.41%), Query Frame = 2
Query:   32 WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF +VLI NVGGAGD+  V +KG+KTGW  M +NWGQNW + + L GQ LSF++T SDG T    NV+P NW
Sbjct:  140 WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNW 261          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.240e-38
Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 2
Query:    8 ALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            AL +D GGWCNPP  HFDM++PA+ QI  Y+AGIVP+ ++R+ C ++GG+RFTV G +YF LVLITNV G+G V S  IKG+ TGW  MSRNWG NWQS + L GQ+LSF +T + G+ +   +V P  W
Sbjct:  113 ALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWW 242          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 67/122 (54.92%), Postives = 92/122 (75.41%), Query Frame = 2
Query:   32 WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF +VLI NVGGAGD+  V +K +KTGW  M +NWGQNW +++ L GQ LSF++T +DG T    NV+P NW
Sbjct:  146 WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNW 267          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 71/131 (54.20%), Postives = 96/131 (73.28%), Query Frame = 2
Query:    5 LALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            L LS+D GGWCN P +HF+M+E AFL++A+ +A IVP+ FRR+ C + GG+RFT+ G + F  VLITNV   G+V +V +KGS+TGW  M RNWGQNWQ ++ L GQ LSF++T   GRTV + +V P +W
Sbjct:  117 LGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDW 247          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.050e-37
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 2
Query:   11 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            L  D GG CNPP  HF +   +F +IA ++AG++PI +RR+ C + GG+RF V G S+F  VLI+NVGGAGDV SV IKG+++GW +M RNWGQ W  NS   GQ LSF+LT+SDG+T+T+ NVVP  W
Sbjct:  116 LPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEW 244          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.804e-37
Identity = 67/129 (51.94%), Postives = 97/129 (75.19%), Query Frame = 2
Query:   14 SNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGR-TVTSNNVVPGNW 397
            +++NGGWCNPP  HFD+ +PAF++IA ++AGI+P+S+RR+ C K GGIRF   G+ Y+ LV + NVGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L GQSLSF+LT+   R T+ + N  P +W
Sbjct:  116 ASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.161e-36
Identity = 65/125 (52.00%), Postives = 91/125 (72.80%), Query Frame = 2
Query:   23 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            N  WCNPP +HFD+++P FL+IA+Y+AG+VP+ FRR+PCAK GG++F + G+ +F ++L  NVGGAG V ++ IKG++T W AM +NWGQ W +   L GQ LSF+LT SDG      +V P +W
Sbjct:  175 NDNWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
BLAST of CN184703 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36
Identity = 69/130 (53.08%), Postives = 94/130 (72.31%), Query Frame = 2
Query:   14 SNDNGGWCNPPLQHFDMAEPAFLQIAQY-RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 397
            +N+N GWCN P  HFDM+ PAF +IA+    GIVP+ +RR+ C ++GG+RFT+ G   FN+V+I+NVGG G V SV+++GSK   W  M+RNWG NWQS+  L GQ LSF++T +D +T T  NVVP +W
Sbjct:  109 TNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSW 238          
The following BLAST results are available for this feature:
BLAST of CN184703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXPA7_ARATH3.263e-3954.40Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP27_ORYSJ3.263e-3953.85Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP22_ARATH3.263e-3956.56Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP31_ORYSJ1.240e-3856.15Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH2.115e-3854.92Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP16_ORYSJ2.115e-3854.20Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ1.050e-3755.81Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH6.804e-3751.94Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP24_ARATH1.161e-3652.00Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP12_ARATH1.516e-3653.08Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184703 ID=CN184703; Name=CN184703; organism=Citrus sinensis; type=EST; length=697bp
GAGGCTTGCCCTGTCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCC
AGCACTTTGACATGGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGC
GCCGGTATCGTCCCAATTTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGG
AGGAATAAGGTTTACCGTCAATGGACACTCATACTTCAACCTGGTTTTGA
TCACAAATGTCGGAGGAGCAGGAGATGTACATTCAGTATCAATCAAGGGT
TCAAAGACTGGATGGCAAGCAATGTCAAGGAACTGGGGCCAAAATTGGCA
GAGCAATTCTTATCTTAACGGCCAAAGTCTTTCTTTCCAATTGACAGCCA
GTGACGGCAGGACTGTGACTAGCAACAATGTTGTGCCTGGAAATTGGCAA
TTTGGGCAAACCTTTGAGGGTGGTCAGTTTTAGATTTTAAAAAAGTGAAT
CAGAATTTGTATATTTAATTGAATTTGGCACTGTTTGTGAGGGAGGAAGG
GTGAGAATAGGGGTAGGTGAGGCTCAGGCCTGGCCGATGTGGCCTGTCTT
GTTGCTGTGGTGGTCTGTTGGCACCCGCTAGGCCTCTATAAATAGAAATG
ATTGTGTTCTATATATAGTTATTACTTCAATTGAATGAACGGGTATAATT
TCATTCAGCGTTGTGATTTCTGGTTATCATTTGAGACATCAGTTAAA
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