CN184702

Overview
NameCN184702
Unique NameCN184702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.069e-29
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NG+ YF+LVLITNVGGAGD+ +VS+KGSKT  WQ+MSRNWGQNWQSN+YL GQSLSFQ+T SDGRTV S +VVP +W
Sbjct:  165 FTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDW 244          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.182e-28
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGH YFNLVLITNV GAGD+   S+KGSKTGW +++RNWGQNWQSN+ L GQSLSF++T+SD RT TS N+ P NW
Sbjct:  169 FTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNW 247          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.433e-28
Identity = 54/80 (67.50%), Postives = 68/80 (85.00%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGHSYFNLVL+TNVGGAGDVH+V++K  ++  WQA+SRNWGQNWQS + L+GQ+LSF++T  DGR+V SNN VP  W
Sbjct:  200 FTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGW 279          

HSP 2 Score: 21.9422 bits (45), Expect = 1.433e-28
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            C KKGGIRF
Sbjct:  192 CQKKGGIRF 200          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.435e-28
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG------WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FTVNGH+YFNLVL+TNVGGAGDV S+++KGS +G      WQ MSRNWGQNWQSN+YL+G++LSF++TA DGR++T  +V P  W
Sbjct:  164 FTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGW 248          

HSP 2 Score: 22.3274 bits (46), Expect = 2.435e-28
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            CA+KGG+RF
Sbjct:  156 CARKGGVRF 164          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGH YFNLVLITNV GAGD+   S+KGS+TGW ++SRNWGQNWQSN+ L GQ+LSF++T SD RT TS N+VP NW
Sbjct:  166 FTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.170e-28
Identity = 53/79 (67.09%), Postives = 66/79 (83.54%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NG  YF LVL++NVGG G + SVSIKGS+TGW AMSRNWG NWQSN+YL+GQSLSF++T+SDG+T+T  +V P  W
Sbjct:  170 FTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGW 248          

HSP 2 Score: 21.9422 bits (45), Expect = 3.170e-28
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            CAK+GG+RF
Sbjct:  162 CAKQGGVRF 170          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.707e-27
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = -1
Query:  278 RRKEE*GFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 535
            R+K    FT+NG  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF++  SDGR+ TSNN+ P NW
Sbjct:  160 RKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNW 245          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.911e-27
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FTVNG  YFNLVL+TNV GAGD++ VS+KGSKT W  MSRNWGQNWQSN+ L GQSLSF++TASD R+ TS NV P  W
Sbjct:  171 FTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATW 249          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = -1
Query:  278 RRKEE*GFTVNGHSYFNLVLITNVGGAGDVHSVSIK---GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 535
            RRK    FT+NGHSYFNLVL++NVGGAGDVH+V++K   G K  WQAM+RNWGQNWQS + L+GQ+LSF +T  D R+V S NV P  W
Sbjct:  164 RRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGW 252          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.204e-26
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = -1
Query:  278 RRKEE*GFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 535
            R+K    FT+NG  YFNLVLITNV GAGD+   S+KG+ TGW  MSRNWGQNWQSNS L GQ+LSF++T SD RT TS N  P  W
Sbjct:  166 RKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
The following BLAST results are available for this feature:
BLAST of CN184702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA2_ARATH1.069e-2975.00Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXP16_ARATH1.182e-2869.62Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA5_ORYSJ1.433e-2867.50Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ORYSJ2.435e-2864.71Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ARATH2.633e-2869.62Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA1_ORYSJ3.170e-2867.09Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA9_ARATH1.707e-2765.12Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA3_ARATH2.911e-2770.89Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP21_ORYSJ4.966e-2762.92Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ORYSJ4.204e-2663.95Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184702 ID=CN184702; Name=CN184702; organism=Citrus sinensis; type=EST; length=541bp
ACCAGAAATCACAACGCTGAATGAAATTATACCCGTTCATTCAATTGAAG
TAATAACTATATATAGAACACAATCATTTCTATTTATAGAGGCCTAGCGG
GTGCCAACAGACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTG
AGCCTCACCTACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAA
ATTCAATTAAATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTG
ACCACCCTCAAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGT
TGCTAGTCACAGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTT
TGGCCGTTAAGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGA
CATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACAT
CTCCTGCTCCTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGT
CCATTGACGGTAAAACCTTATTCCTCCTTTCTTCGCACACG
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