CN184702

Overview
NameCN184702
Unique NameCN184702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:83..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.683e-22
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = -1
Query:  278 RRKEE*GFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK--TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 535
            RR+    FTV G  YF LVL+TNV  AG V S+ ++GS+   GW AMSRNWG NWQS +YL+GQ LSF++TA+DG+T+    VVP +W
Sbjct:  163 RRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSW 250          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.072e-21
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FTV+G   F  VLITNV G+GD+ +V IKGS+TGW  M RNWGQNW  N+ L  Q+LSF++T+SD  TVTS NV P NW
Sbjct:  174 FTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNW 252          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.789e-21
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGH YFNLVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ+LSF++T  DG+T+   N+VP  W
Sbjct:  170 FTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGW 249          

HSP 2 Score: 21.557 bits (44), Expect = 1.789e-21
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            C KKGG+RF
Sbjct:  162 CIKKGGVRF 170          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.324e-21
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGH YFNLVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ LSF++T  DG+T+   N+VP  W
Sbjct:  186 FTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 265          

HSP 2 Score: 21.9422 bits (45), Expect = 2.324e-21
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            C KKGG+RF
Sbjct:  178 CVKKGGVRF 186          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.464e-20
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGH YFNLVL+TNV   G + S+ + GS  T W  M RNWG NW S SYL GQ LSF++T  DG+T+   N+VP  W
Sbjct:  188 FTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 267          

HSP 2 Score: 21.9422 bits (45), Expect = 1.464e-20
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            C KKGG+RF
Sbjct:  180 CVKKGGVRF 188          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.467e-20
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NGH YF LVL+TNVG AG + ++ +KGSK+  W AM+ NWG  W S +YL GQ LSF++T +DG+T+   NVV   W
Sbjct:  170 FTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGW 249          

HSP 2 Score: 21.557 bits (44), Expect = 1.467e-20
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            C KKGG+RF
Sbjct:  162 CMKKGGVRF 170          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+ G +YF LVL+TN+ G+G + S+S+KGS TGW  MSRNWG NWQ  + L GQ+LSF +T++ G+T+  ++VVP  W
Sbjct:  157 FTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGW 235          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 41/79 (51.90%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+NG +YF LVL+TN+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L GQ+LSF +T++ G+T+  ++ VP  W
Sbjct:  157 FTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 235          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+ G ++F LVL++NV G+G V SVS+KG  TGW  ++RNWG NWQ NS L GQ+LSF +T++ G+T+   NVVP  W
Sbjct:  163 FTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWW 241          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            F   G+ YF +VLI NVGGAGD+  V +KG+KTGW  M +NWGQNW + + L GQ LSF++T SDG T    NV+P NW
Sbjct:  183 FETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNW 261          
The following BLAST results are available for this feature:
BLAST of CN184702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP29_ORYSJ3.683e-2255.68Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH1.072e-2160.76Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP14_ORYSJ1.789e-2156.25Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ2.324e-2156.25Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ1.464e-2055.00Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ1.467e-2053.75Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ2.021e-2053.16Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ2.639e-2051.90Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ4.502e-2054.43Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH4.502e-2055.70Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184702 ID=CN184702; Name=CN184702; organism=Citrus sinensis; type=EST; length=541bp
ACCAGAAATCACAACGCTGAATGAAATTATACCCGTTCATTCAATTGAAG
TAATAACTATATATAGAACACAATCATTTCTATTTATAGAGGCCTAGCGG
GTGCCAACAGACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTG
AGCCTCACCTACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAA
ATTCAATTAAATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTG
ACCACCCTCAAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGT
TGCTAGTCACAGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTT
TGGCCGTTAAGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGA
CATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACAT
CTCCTGCTCCTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGT
CCATTGACGGTAAAACCTTATTCCTCCTTTCTTCGCACACG
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