CN184702

Overview
NameCN184702
Unique NameCN184702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 40/80 (50.00%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 514
            F   G+SY+ L+ + NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L GQSLSF++T+ + G T+ + NV P NW
Sbjct:  170 FQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANW 249          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.298e-17
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            FT+ G +YF LVLI+NV G+G + SV +KG  T    +SRNWG NWQS++ L GQ+L+F +T++ G+T+   N+VP  W
Sbjct:  168 FTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWW 246          

HSP 2 Score: 20.4014 bits (41), Expect = 2.298e-17
Identity = 6/9 (66.67%), Postives = 8/9 (88.89%), Query Frame = -3
Query:  513 CAKKGGIRF 539
            C K+GG+RF
Sbjct:  160 CVKQGGVRF 168          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 7.947e-17
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            F V G+     +L  NVGGAGD+ +VS KGSKT W  MSR WGQNW +N  L GQS+S ++T SDG T    +V+P +W
Sbjct:  172 FEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASW 250          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            F+++G S+F  VLI+NVG  G+V  V +KG  T W  M+RNWGQNW S+  L GQSLSF++T   G+T+ S +V P  W
Sbjct:  165 FSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYW 243          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGR-TVTSNNVVPGNW 514
            F   G+ Y+ LV + NVGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L GQSLSF+LT+   R T+ + N  P +W
Sbjct:  165 FKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            F + G+ +F ++L  NVGGAG V ++ IKG++T W AM +NWGQ W +   L GQ LSF+LT SDG      +V P +W
Sbjct:  221 FEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 514
            +T+ G+  +N+V++ NVGGAGDV  +++KG+K   W  + R+WGQ W++ + L G+SL+F++   D R  TS  V P +W
Sbjct:  199 YTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDW 278          
BLAST of CN184702 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  278 FTVNGHSYFNLVLITNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 514
            F + G+ Y+ L  + NV GAGDV  + +K G   GW  MS NWG ++Q+ + L GQ+LSF++T+ + G+T+ +  V P +W
Sbjct:  173 FALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASW 253          
The following BLAST results are available for this feature:
BLAST of CN184702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA7_ARATH2.091e-1750.00Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP15_ORYSJ2.298e-1749.37Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH7.947e-1751.90Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH1.770e-1650.63Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP18_ARATH3.339e-1547.50Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP24_ARATH5.695e-1546.84Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP26_ORYSJ2.826e-1441.25Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ2.239e-1140.74Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184702 ID=CN184702; Name=CN184702; organism=Citrus sinensis; type=EST; length=541bp
ACCAGAAATCACAACGCTGAATGAAATTATACCCGTTCATTCAATTGAAG
TAATAACTATATATAGAACACAATCATTTCTATTTATAGAGGCCTAGCGG
GTGCCAACAGACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTG
AGCCTCACCTACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAA
ATTCAATTAAATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTG
ACCACCCTCAAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGT
TGCTAGTCACAGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTT
TGGCCGTTAAGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGA
CATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACAT
CTCCTGCTCCTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGT
CCATTGACGGTAAAACCTTATTCCTCCTTTCTTCGCACACG
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