DC887457

Overview
NameDC887457
Unique NameDC887457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8B_PONAB (ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.156e-38
Identity = 69/114 (60.53%), Postives = 90/114 (78.95%), Query Frame = -2
Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPRFRSMWERYCR V+AIVY++DAA  + +  SR+ELH+LL+KP L GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK   NID  + WL++HSKS+
Sbjct:   71 DIGGQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184          

HSP 2 Score: 22.7126 bits (47), Expect = 2.156e-38
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = -1
Query:  552 TKGNVPIKLW 581
            TKGNV IK+W
Sbjct:   61 TKGNVTIKIW 70          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.156e-38
Identity = 68/114 (59.65%), Postives = 91/114 (79.82%), Query Frame = -2
Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQPR+RSMWERYCR V+AIVY++DAAD + +  SR+ELH+LL+KP L GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK   NID  + WL+++SKS+
Sbjct:   71 DIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQYSKSR 184          

HSP 2 Score: 22.7126 bits (47), Expect = 2.156e-38
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = -1
Query:  552 TKGNVPIKLW 581
            TKGNV IK+W
Sbjct:   61 TKGNVTIKIW 70          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.446e-34
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = -2
Query:  212 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 550
            D+GGQPRFRSMWERYCR V+AIV+VVD+AD +    S+  L DL+NKP L+ IPLLV+ NK D P +     +   + L+ I  REVCC+ IS KNS NID  +DWL+KHS S
Sbjct:   70 DIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVANKNDLPNSAGVDEMIQNLDLRGIVGREVCCYSISAKNSVNIDITLDWLIKHSSS 182          

HSP 2 Score: 23.483 bits (49), Expect = 8.446e-34
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -1
Query:  552 TKGNVPIKLW 581
            TKGNV IKLW
Sbjct:   60 TKGNVTIKLW 69          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.339e-15
Identity = 43/114 (37.72%), Postives = 59/114 (51.75%), Query Frame = -2
Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            DLGGQ   R  W  Y     AI+YVVD+AD D + ISR EL  +L +  L G  L VL NK D  G L++  +   +GL ++ +R +  F  S      +D  +DWL    + K
Sbjct:   66 DLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLANQLQQK 179          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.895e-15
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = -2
Query:  209 FQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 568
            F+L+  D+GGQ   RS W  Y  +   +++VVD+AD   +   + EL +LL +  L+G  LL+  NK D PGALS  A+ + + L SI     C    S     N+   IDWL+    S+
Sbjct:   60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALSSNAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.895e-15
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = -2
Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            DLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++ DR+   F  S    T +D  ++WLV+  KS+
Sbjct:   67 DLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.087e-15
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = -2
Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            DLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++ DR+   F  S    T +D  ++WLV+  KS+
Sbjct:   67 DLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = -2
Query:  209 FQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 568
            F+L+  D+GGQ   RS W  Y  +   +++VVD+AD   +   + EL  LL +  L+G  LL+  NK D PGALS  A+ + + L SI     C    S     N+   IDWL+    S+
Sbjct:   60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = -2
Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            DLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++ DR+   F  S    T +D  ++WLV+  KS+
Sbjct:   67 DLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = -2
Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            DLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++ DR+   F  S    T +D  ++WLV+  KS+
Sbjct:   67 DLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
The following BLAST results are available for this feature:
BLAST of DC887457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
ARL8B_PONAB2.156e-3860.53ADP-ribosylation factor-like protein 8B OS=Pongo a... [more]
ARL8B_MACFA2.156e-3859.65ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]
ARL8_DICDI8.446e-3456.64ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARL1_CAEEL1.339e-1537.72ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARL2_BOVIN3.895e-1535.83ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARL1_HUMAN3.895e-1535.96ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN5.087e-1535.96ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARL2_HUMAN6.644e-1535.83ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
ARL1_RAT6.644e-1535.96ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE6.644e-1535.96ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionDC887457 EIC Citrus sinensis cDNA clone EIC0397 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887457 ID=DC887457; Name=DC887457; organism=Citrus sinensis; type=EST; length=581bp
CCNAGCCATATTAGGATAAATTATCTAATATAATACACTACATGCAACTC
AGAACTCAGAAGGGAAAAAAATCATTAACAAACAGCAAAACAAGTTTGAA
TGATGAAAACTTCCATTAACACCCCAGAAATGCATCCTTCTGAAATTATA
TCACAGACATCCACAAAGAAAGAAGAAAAGGGATAAGTAAAAATAAGTCC
TCTCAGCTCTTTGACTTTGAATGTTTGACAAGCCAATCAATTACGGAGTC
AATGTTGGTCGAGTTCTTGCATGAGATCATAAAGCAGCAAACTTCTCTGT
CGGTGATGGATTTTAGTCCCATTTCATCAGTTAAAGCCTGTTTAGATAGA
GCTCCGGGTTTGTCAATCTTGTTCCCTAGCACCAGCAAAGGGATACCACT
AAGTGAGGGTTTGTTCAGCAAATCATGAAGTTCACTTCTTGAAATGCTCA
GGTTGTCAGGATCAGCAGCATCCACCACGTAAACAATAGCAGAAACTGCC
CGGCAATACCGCTCCCACATACTGCGGAATCTAGGTTGACCTCCAAGATC
CCCAAAGCTTAATTGGAACATTTCCTTTTGT
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