DC887457

Overview
NameDC887457
Unique NameDC887457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 35/124 (28.23%), Postives = 60/124 (48.39%), Query Frame = -2 
Query:  209 QKEMFQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 580
            Q + F+L+  D+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL +  LS +P+L+  NK D   A     + + + L +I DR       S      +   ++W+ K+  +K
Sbjct:   57 QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
[Close]
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL3_BOVIN (ADP-ribosylation factor-like protein 3 OS=Bos taurus GN=ARL3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 35/124 (28.23%), Postives = 60/124 (48.39%), Query Frame = -2 
Query:  209 QKEMFQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 580
            Q + F+L+  D+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL +  LS +P+L+  NK D   A     + + + L +I DR       S      +   ++W+ K+  +K
Sbjct:   57 QSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRFWQIQSCSALTGEGVQDGMNWVCKNVSAK 180
[Close]
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = -2 
Query:  230 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 550
            D+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
[Close]
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = -2 
Query:  230 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 550
            D+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
[Close]
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = -2 
Query:  230 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 550
            D+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
[Close]
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = -2 
Query:  230 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 550
            D+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
[Close]
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = -2 
Query:  230 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 550
            D+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
[Close]
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = -2 
Query:  230 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 550
            D+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
The following BLAST results are available for this feature:
BLAST of DC887457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
ARL3_MOUSE9.927e-1128.23ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL3_BOVIN9.927e-1128.23ADP-ribosylation factor-like protein 3 OS=Bos taur... [more]
ARF1_XENLA9.927e-1130.84ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT9.927e-1130.84ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE9.927e-1130.84ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA9.927e-1130.84ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN9.927e-1130.84ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN9.927e-1130.84ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]

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Properties
Property NameValue
Genbank descriptionDC887457 EIC Citrus sinensis cDNA clone EIC0397 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887457 ID=DC887457; Name=DC887457; organism=Citrus sinensis; type=EST; length=581bp
CCNAGCCATATTAGGATAAATTATCTAATATAATACACTACATGCAACTC
AGAACTCAGAAGGGAAAAAAATCATTAACAAACAGCAAAACAAGTTTGAA
TGATGAAAACTTCCATTAACACCCCAGAAATGCATCCTTCTGAAATTATA
TCACAGACATCCACAAAGAAAGAAGAAAAGGGATAAGTAAAAATAAGTCC
TCTCAGCTCTTTGACTTTGAATGTTTGACAAGCCAATCAATTACGGAGTC
AATGTTGGTCGAGTTCTTGCATGAGATCATAAAGCAGCAAACTTCTCTGT
CGGTGATGGATTTTAGTCCCATTTCATCAGTTAAAGCCTGTTTAGATAGA
GCTCCGGGTTTGTCAATCTTGTTCCCTAGCACCAGCAAAGGGATACCACT
AAGTGAGGGTTTGTTCAGCAAATCATGAAGTTCACTTCTTGAAATGCTCA
GGTTGTCAGGATCAGCAGCATCCACCACGTAAACAATAGCAGAAACTGCC
CGGCAATACCGCTCCCACATACTGCGGAATCTAGGTTGACCTCCAAGATC
CCCAAAGCTTAATTGGAACATTTCCTTTTGT
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