DC887457

Overview
NameDC887457
Unique NameDC887457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 40/115 (34.78%), Postives = 58/115 (50.43%), Query Frame = -2
Query:  206 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 550
            DLGGQ   R  W  Y     A++YVVD++D D + +++ E H +L +  L G  +L+  NK D PGAL   A+T+ + L  I  R+   F         +   +DWL    KS S
Sbjct:   67 DLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSGS 181          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 40/115 (34.78%), Postives = 58/115 (50.43%), Query Frame = -2
Query:  206 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 550
            DLGGQ   R  W  Y     A++YVVD++D D + +++ E H +L +  L G  +L+  NK D PGAL   A+T+ + L  I  R+   F         +   +DWL    KS S
Sbjct:   67 DLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSGS 181          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = -2
Query:  227 QLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 565
            +L+  DLGGQ   R  W  Y    +A+++VVD+ D D +S +  ELH +L +  L    LLV  NK D+PGALS   ++ E+ L  + DR       S      I   +DWL+
Sbjct:   63 KLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = -2
Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            DLGGQ   R  W  Y     AI+YVVD+AD D + IS+ EL  +L +  L+G  L+VL NK D  G ++   +   +GL+++ +R    F  S      +D  +DWL    +S+
Sbjct:   66 DLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQSR 179          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = -2
Query:  311 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK 550
            DLGG  + R +W+ Y  AV A+V+++D AD + +  SR EL  LL    ++ +P+L+LGNKIDKPGALS+  L  ++ ++
Sbjct:   71 DLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQ 150          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -2
Query:  206 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 550
            D+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL  +  SK+
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = -2
Query:  230 FQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 568
            FQL+  D+GGQ   RS W+ Y  +  A+++VVD++D + L+    EL  LL +  LSG  LLVL NK D PGA+   ++   + L+SI       F     +   +   + WL
Sbjct:   60 FQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASLLVLANKSDLPGAIDVNSIAQVLELQSIKTHHWKIFSCCALSGERLVQAMTWL 172          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = -2
Query:  206 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 550
            D+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R              +   +DWL  +  +KS
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -2
Query:  206 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 550
            D+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL  +  SK+
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  293 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDRE 550
            DLGG  + R +W+ Y   V  IVY+VD ADP+    SR EL  LL    LS +P+LVLGNKIDK  A+S+  L   +GL + T ++
Sbjct:   70 DLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGLMTTTGKD 155          
The following BLAST results are available for this feature:
BLAST of DC887457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
ARF3_ARATH8.677e-1534.78ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP8.677e-1534.78ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARL1_YEAST1.133e-1436.28ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARL1_DROME2.525e-1435.96ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
SAR1_CAEEL4.306e-1443.75GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
ARF1_SALBA4.306e-1433.04ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARL2_CAEBR9.593e-1435.40ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARF_MAIZE9.593e-1433.04ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF1_ARATH9.593e-1433.04ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
SAR1_PICPG1.253e-1346.51Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]

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Properties
Property NameValue
Genbank descriptionDC887457 EIC Citrus sinensis cDNA clone EIC0397 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887457 ID=DC887457; Name=DC887457; organism=Citrus sinensis; type=EST; length=581bp
CCNAGCCATATTAGGATAAATTATCTAATATAATACACTACATGCAACTC
AGAACTCAGAAGGGAAAAAAATCATTAACAAACAGCAAAACAAGTTTGAA
TGATGAAAACTTCCATTAACACCCCAGAAATGCATCCTTCTGAAATTATA
TCACAGACATCCACAAAGAAAGAAGAAAAGGGATAAGTAAAAATAAGTCC
TCTCAGCTCTTTGACTTTGAATGTTTGACAAGCCAATCAATTACGGAGTC
AATGTTGGTCGAGTTCTTGCATGAGATCATAAAGCAGCAAACTTCTCTGT
CGGTGATGGATTTTAGTCCCATTTCATCAGTTAAAGCCTGTTTAGATAGA
GCTCCGGGTTTGTCAATCTTGTTCCCTAGCACCAGCAAAGGGATACCACT
AAGTGAGGGTTTGTTCAGCAAATCATGAAGTTCACTTCTTGAAATGCTCA
GGTTGTCAGGATCAGCAGCATCCACCACGTAAACAATAGCAGAAACTGCC
CGGCAATACCGCTCCCACATACTGCGGAATCTAGGTTGACCTCCAAGATC
CCCAAAGCTTAATTGGAACATTTCCTTTTGT
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