DC887457

Overview
NameDC887457
Unique NameDC887457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = -2
Query:  296 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR 550
            DLGG  + R +W+ Y   V  IV++VD  D +  + +R+EL  LL+   LS +P L+LGNKID PGA+S++ L   +GL   T +
Sbjct:   70 DLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQTTGK 154          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = -2
Query:  296 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR 550
            D+GGQ + R +W  Y +    I++VVD+ D D ++ +R EL  +LN+  L    LLVL NK D P A++   +T++MGL SI +R
Sbjct:   67 DVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNR 151          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 36/115 (31.30%), Postives = 61/115 (53.04%), Query Frame = -2
Query:  206 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 550
            D+GGQ + R +W  Y +    +++VVD+ D + +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL  +  +K+
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 36/115 (31.30%), Postives = 61/115 (53.04%), Query Frame = -2
Query:  206 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 550
            D+GGQ + R +W  Y +    +++VVD+ D + +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL  +  +K+
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANKT 181          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 37/115 (32.17%), Postives = 60/115 (52.17%), Query Frame = -2
Query:  206 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 550
            D+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD+ GL S+  R          +   +   +DWL  +  +K+
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = -2
Query:  221 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT----------DREVCCFMISCKNSTNIDSVIDWLVKH 550
            DLGG  + R +W+ Y   V+ IV++VDAAD +  + S++EL  L     LS +P ++LGNKID P A+ +  L + +GL + T           R +  FM+S    +       WL ++
Sbjct:   70 DLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYNTTGKDTGKLPEGQRPIEVFMVSVVMRSGYGDAFKWLSQY 189          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  296 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR 550
            DLGG  + R +W+ Y   VS IV++VDA D +    S++EL  LL    LS +P LVLGNKID P A+S+  L  ++GL   T +
Sbjct:   70 DLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLYQTTGK 154          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  293 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDRE 550
            DLGG  + R +W+ Y   V+ IV++VDAADP+  + S++EL  L     L+ +P L+LGNKID   A+ +  L   +GL + T ++
Sbjct:   70 DLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYNTTGKD 155          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL2_RAT (ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = -2
Query:  209 FQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 568
            F+L+  D+GGQ   RS W  Y  +   +++VVD+AD   +   + EL  LL +  L+G  LL+  NK D PGALS  A+ + + L SI          S     ++   IDWL+    S+
Sbjct:   60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 179          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = -2
Query:  209 FQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 568
            F+L+  D+GGQ   RS W  Y  +   +++VVD+AD   +   + EL  LL +  L+G  LL+  NK D PGALS  A+ + + L SI          S     ++   IDWL+    S+
Sbjct:   60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 179          
The following BLAST results are available for this feature:
BLAST of DC887457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
SAR1_USTMA6.218e-1342.35Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
ARF_CANAL6.218e-1341.18ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF2_ORYSJ6.218e-1331.30ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE6.218e-1331.30ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_CATRO6.218e-1332.17ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
SAR1_LODEL1.061e-1233.33Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_EMENI1.061e-1244.71Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1_DEBHA1.061e-1239.53Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
ARL2_RAT1.061e-1234.17ADP-ribosylation factor-like protein 2 OS=Rattus n... [more]
ARL2_MOUSE1.061e-1234.17ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionDC887457 EIC Citrus sinensis cDNA clone EIC0397 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887457 ID=DC887457; Name=DC887457; organism=Citrus sinensis; type=EST; length=581bp
CCNAGCCATATTAGGATAAATTATCTAATATAATACACTACATGCAACTC
AGAACTCAGAAGGGAAAAAAATCATTAACAAACAGCAAAACAAGTTTGAA
TGATGAAAACTTCCATTAACACCCCAGAAATGCATCCTTCTGAAATTATA
TCACAGACATCCACAAAGAAAGAAGAAAAGGGATAAGTAAAAATAAGTCC
TCTCAGCTCTTTGACTTTGAATGTTTGACAAGCCAATCAATTACGGAGTC
AATGTTGGTCGAGTTCTTGCATGAGATCATAAAGCAGCAAACTTCTCTGT
CGGTGATGGATTTTAGTCCCATTTCATCAGTTAAAGCCTGTTTAGATAGA
GCTCCGGGTTTGTCAATCTTGTTCCCTAGCACCAGCAAAGGGATACCACT
AAGTGAGGGTTTGTTCAGCAAATCATGAAGTTCACTTCTTGAAATGCTCA
GGTTGTCAGGATCAGCAGCATCCACCACGTAAACAATAGCAGAAACTGCC
CGGCAATACCGCTCCCACATACTGCGGAATCTAGGTTGACCTCCAAGATC
CCCAAAGCTTAATTGGAACATTTCCTTTTGT
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