DC887457

Overview
NameDC887457
Unique NameDC887457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL3_XENLA (ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 36/124 (29.03%), Postives = 62/124 (50.00%), Query Frame = -2
Query:  209 QKEMFQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 580
            Q + F+L+  D+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL++  LSG+P+L+  NK D   A     + + + L +I DR       S      +   ++W+ K+  +K
Sbjct:   57 QSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGQGVQDGMNWVCKNVNAK 180          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL3_TAEGU (ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 36/124 (29.03%), Postives = 63/124 (50.81%), Query Frame = -2
Query:  209 QKEMFQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 580
            Q + F+L+  D+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL++  LSG+P+L+  NK D   A     + + + L +I DR       S  +   +   ++W+ K+  +K
Sbjct:   57 QSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALSGEGVQDGMNWVCKNVSTK 180          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 37/125 (29.60%), Postives = 65/125 (52.00%), Query Frame = -2
Query:  209 FQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDR----EVCCFMISCKNSTNIDSVIDWLVKHSKSK 568
            F L+  D+GGQ + R++W  YC     +VYVVD+ D   L  S+ +   +L    +  +P+++L NK D PGAL+ + +T    +K + +DR    + CC +     +     +  ++  H KS+
Sbjct:   58 FSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVKSHMKSR 182          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL3_DANRE (ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 37/124 (29.84%), Postives = 61/124 (49.19%), Query Frame = -2
Query:  209 QKEMFQLSFGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 580
            Q + F+L+  D+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL++  LSG+P+LV  NK D   A     + + + L +I DR       S      +   ++W+ K   +K
Sbjct:   57 QSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLVFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKSVNAK 180          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 35/114 (30.70%), Postives = 61/114 (53.51%), Query Frame = -2
Query:  209 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 550
            D+GGQ + R +W  Y +    I++VVD+ D + +S +  EL  +LN+  L    LLV  NK D P A++   +TD++GL S+  R+         +   +   ++WL  + K++
Sbjct:   67 DVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = -2
Query:  302 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT 550
            DLGG    R +W  Y   V A+VY+VDA D +    ++ EL  LL+  SL+ +P L+LGNKID P A S+  L   +GL  +T
Sbjct:   70 DLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVT 152          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = -2
Query:  221 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITD---------REVCCFMISCKNSTNIDSVIDWLVKH 550
            DLGG  + R +W+ Y   V+ IV++VDA D + L  +++E+  LL+   L+ +P +VLGNKID P A+S+  L   +GL   T          R +  FM S          I WL ++
Sbjct:   70 DLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLWQTTGKGRVPLEGIRPIEVFMCSVVMRQGYGEAIRWLSQY 188          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 35/115 (30.43%), Postives = 60/115 (52.17%), Query Frame = -2
Query:  206 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 550
            D+GGQ R RS+W  Y R    +++V+D+ D   +  +R  +  +LN+  L     LV  NK D P A+S   +T+++GL SI +R          +   +   ++WL  + K++S
Sbjct:   67 DVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQS 181          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL4C_MOUSE (ADP-ribosylation factor-like protein 4C OS=Mus musculus GN=Arl4c PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 37/120 (30.83%), Postives = 61/120 (50.83%), Query Frame = -2
Query:  212 FGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR-----EVCCFMISCKNSTNIDSVIDWLVKHSKS 556
            F D+GGQ + R +W+ Y R    I+YVVD+ D D L  +++ELH +       G PLLV+ NK D P +L    +  ++ L  +        +  C +I    +  +D + + ++K  KS
Sbjct:   66 FWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKS 185          
BLAST of DC887457 vs. ExPASy Swiss-Prot
Match: ARL4C_HUMAN (ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 37/120 (30.83%), Postives = 61/120 (50.83%), Query Frame = -2
Query:  212 FGDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR-----EVCCFMISCKNSTNIDSVIDWLVKHSKS 556
            F D+GGQ + R +W+ Y R    I+YVVD+ D D L  +++ELH +       G PLLV+ NK D P +L    +  ++ L  +        +  C +I    +  +D + + ++K  KS
Sbjct:   66 FWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKS 185          
The following BLAST results are available for this feature:
BLAST of DC887457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
ARL3_XENLA4.030e-1229.03ADP-ribosylation factor-like protein 3 OS=Xenopus ... [more]
ARL3_TAEGU4.030e-1229.03ADP-ribosylation factor-like protein 3 OS=Taeniopy... [more]
ARL14_HUMAN4.030e-1229.60ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]
ARL3_DANRE5.264e-1229.84ADP-ribosylation factor-like protein 3 OS=Danio re... [more]
ARF1_SCHPO5.264e-1230.70ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
SAR2_SOLLC6.875e-1243.37GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_NEUCR6.875e-1234.45Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
ARF2_YEAST6.875e-1230.43ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARL4C_MOUSE8.979e-1230.83ADP-ribosylation factor-like protein 4C OS=Mus mus... [more]
ARL4C_HUMAN8.979e-1230.83ADP-ribosylation factor-like protein 4C OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionDC887457 EIC Citrus sinensis cDNA clone EIC0397 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887457 ID=DC887457; Name=DC887457; organism=Citrus sinensis; type=EST; length=581bp
CCNAGCCATATTAGGATAAATTATCTAATATAATACACTACATGCAACTC
AGAACTCAGAAGGGAAAAAAATCATTAACAAACAGCAAAACAAGTTTGAA
TGATGAAAACTTCCATTAACACCCCAGAAATGCATCCTTCTGAAATTATA
TCACAGACATCCACAAAGAAAGAAGAAAAGGGATAAGTAAAAATAAGTCC
TCTCAGCTCTTTGACTTTGAATGTTTGACAAGCCAATCAATTACGGAGTC
AATGTTGGTCGAGTTCTTGCATGAGATCATAAAGCAGCAAACTTCTCTGT
CGGTGATGGATTTTAGTCCCATTTCATCAGTTAAAGCCTGTTTAGATAGA
GCTCCGGGTTTGTCAATCTTGTTCCCTAGCACCAGCAAAGGGATACCACT
AAGTGAGGGTTTGTTCAGCAAATCATGAAGTTCACTTCTTGAAATGCTCA
GGTTGTCAGGATCAGCAGCATCCACCACGTAAACAATAGCAGAAACTGCC
CGGCAATACCGCTCCCACATACTGCGGAATCTAGGTTGACCTCCAAGATC
CCCAAAGCTTAATTGGAACATTTCCTTTTGT
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