CN184693

Overview
NameCN184693
Unique NameCN184693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS15A_SCHPO (40S ribosomal protein S15-A OS=Schizosaccharomyces pombe GN=rps15a PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.963e-52
Identity = 97/138 (70.29%), Postives = 115/138 (83.33%), Query Frame = -3
Query:  162 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 575
            KKR+F+ F++RGV+L+ LLD+S ++L  LF ARARRR  RGL       I+KLRKAK EAP  EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   16 KKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS15_CAEEL (40S ribosomal protein S15 OS=Caenorhabditis elegans GN=rps-15 PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 5.711e-52
Identity = 98/138 (71.01%), Postives = 114/138 (82.61%), Query Frame = -3
Query:  162 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 575
            KKRTF+KF +RGVDLD LLDMS ++  KL   R RRR  RGLKRK +ALI K++KAK+ A   EKP  V+THLR+MII+PE++G +IG+YNGK FNQ EIKPEMIG YL EF+ISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   14 KKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS15_YEAST (40S ribosomal protein S15 OS=Saccharomyces cerevisiae GN=RPS15 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.115e-47
Identity = 92/138 (66.67%), Postives = 108/138 (78.26%), Query Frame = -3
Query:  162 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 575
            KKR FK  S+RGVDL+ LL+MST++  KL  AR RRRF RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI+Y PV+HGR G     +SRFIPLK
Sbjct:    8 KKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAG---ATTSRFIPLK 142          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS156_ARATH (40S ribosomal protein S15-6 OS=Arabidopsis thaliana GN=RPS15F PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.102e-46
Identity = 98/152 (64.47%), Postives = 118/152 (77.63%), Query Frame = -3
Query:  162 AGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEK--PDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGA----THSSRFIPLK 599
            A A A   KKRTFKKFSFRG ++DALL MS  +LAKLF+AR RRRF RGLK++P+ LIKKLR+AK+EA    K  P+ V+THLRNMIIVPEMIGS++GV+NGK FN++ IKPEMIGHYLAEFS++ K V H RP I        S+RFIPL+
Sbjct:    9 ATAVAVATKKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEASDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTRFIPLR 160          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS15_DICDI (40S ribosomal protein S15 OS=Dictyostelium discoideum GN=rps15 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.967e-44
Identity = 88/141 (62.41%), Postives = 107/141 (75.89%), Query Frame = -3
Query:  162 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPP-GEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 581
            Q KKRTFKKF++ GV L++LLD+  ++L  L   RARR+ +R    K +  +KK R +K      GEKP  V+TH RN++IVPEMIGS+IG+YNGK FNQVE+KPEMIGHY  EFS+SYK V HGRPGIGATHSSRFIPLK
Sbjct:    4 QIKKRTFKKFTYSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNFLKKCRASKAAVTQVGEKPALVKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHYTGEFSLSYKSVNHGRPGIGATHSSRFIPLK 144          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_THEGJ (30S ribosomal protein S19P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps19p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.481e-33
Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F +RG  LD LL+MS +E AKL  AR RR  +RGL  +   L++K+R AK+    G+   P+RTH R+MI++PEM+G  I V+NGK F  +EIKPEMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTLDELLNMSLEEFAKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGITIHVHNGKEFVPIEIKPEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAVK 133          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_PYRFU (30S ribosomal protein S19P OS=Pyrococcus furiosus GN=rps19p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.481e-33
Identity = 71/133 (53.38%), Postives = 96/133 (72.18%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F +RG  L+ L++MS +ELA+LF AR RR  +RGL  +   L++K+R AK+    G+   P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PG+GAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK 132          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS15_NAEGR (40S ribosomal protein S15 (Fragment) OS=Naegleria gruberi GN=RPS15 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.481e-33
Identity = 67/118 (56.78%), Postives = 88/118 (74.58%), Query Frame = -3
Query:  162 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 515
            M  DEL  LF++  RR   +G+ +K   LI+K +K +  AP GEKPD V+THLR+MII+P MIG +IGVY GK +  VEIKPEM+G  L++FS++Y+PVKHG+P IGAT SS F+PLK
Sbjct:    3 MENDELKNLFTSALRRIIGKGISKKYKTLIEKAQKKRDTAPYGEKPDAVKTHLRDMIILPSMIGCVIGVYQGKDYVSVEIKPEMVGMKLSDFSLTYRPVKHGKPSIGATSSSGFVPLK 120          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_PYRKO (30S ribosomal protein S19P OS=Pyrococcus kodakaraensis GN=rps19p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.013e-32
Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F +RG  LD LL+MS +E AKL  +R RR  +RGL  +   L++K+R AK+    G+   P+RTH R+MI++PEM+G  I VYNGK F  VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTLDELLNMSLEEFAKLLPSRQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFAMTRKVVQHGSPGVGATRSSMFVAVK 133          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_PYRAB (30S ribosomal protein S19P OS=Pyrococcus abyssi GN=rps19p PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.323e-32
Identity = 71/133 (53.38%), Postives = 95/133 (71.43%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F +RG  L+ L++MS +ELAKL  AR RR  +RGL  +   L++K+R AK+    G+   P+RTH R+MI++PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PGIGAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132          
The following BLAST results are available for this feature:
BLAST of CN184693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15A_SCHPO1.963e-5270.2940S ribosomal protein S15-A OS=Schizosaccharomyces... [more]
RS15_CAEEL5.711e-5271.0140S ribosomal protein S15 OS=Caenorhabditis elegan... [more]
RS15_YEAST1.115e-4766.6740S ribosomal protein S15 OS=Saccharomyces cerevis... [more]
RS156_ARATH2.102e-4664.4740S ribosomal protein S15-6 OS=Arabidopsis thalian... [more]
RS15_DICDI1.967e-4462.4140S ribosomal protein S15 OS=Dictyostelium discoid... [more]
RS19_THEGJ3.481e-3352.6330S ribosomal protein S19P OS=Thermococcus gammato... [more]
RS19_PYRFU3.481e-3353.3830S ribosomal protein S19P OS=Pyrococcus furiosus ... [more]
RS15_NAEGR3.481e-3356.7840S ribosomal protein S15 (Fragment) OS=Naegleria ... [more]
RS19_PYRKO1.013e-3252.6330S ribosomal protein S19P OS=Pyrococcus kodakarae... [more]
RS19_PYRAB1.323e-3253.3830S ribosomal protein S19P OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184693 ID=CN184693; Name=CN184693; organism=Citrus sinensis; type=EST; length=607bp
CGTTAAGCATTACTCTTGAGCAGAATATCCTTCAAAACTATTTTGCATCA
CACTCTTTCAAAAGCTTTAATTAAAACTGAATCGACAAAAACAGGCAGGT
CCAAAATCATTTTTTGGAGGACAAAACATACCCTCCATAAGGACAGCATG
CAAAATCTTCACTTCAGAGGAATGAACCTAGAAGAGTGGGTAGCACCAAT
ACCAGGTCTTCCGTGCTTAACTGGCTTGTATGAGATCGAGAACTCAGCTA
GATAATGTCCAATCATTTCGGGCTTAATTTCAACTTGATTAAAGGTCTTG
CCATTGTAAACACCAATTATACTACCGATCATTTCAGGCACAATGATCAT
GTTGCGAAGATGAGTCCTAACTGGATCAGGCTTCTCGCCGGGTGGAGCTT
CCCTTTTCGCCTTGCGCAACTTCTTGATCAACGCCATAGGCTTCCTTTTC
AACCCCCTCTGAAACCTTCTGCGAGCACGGGCGCTAAATAGCTTGGCGAG
CTCATCAGTAGACATGTCCAAAAGAGCGTCCAAATCAACACCTCTGAAGC
TGAACTTCTTGAATGTCCTCTTCTTTGGCTGTCCTGCAGCAGCACCAGCA
GCAACCC
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