CN184693

Overview
NameCN184693
Unique NameCN184693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_PYRHO (30S ribosomal protein S19P OS=Pyrococcus horikoshii GN=rps19p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.256e-32
Identity = 71/133 (53.38%), Postives = 95/133 (71.43%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F +RG  L+ L++MS +ELA+L  AR RR  +RGL  +   L++K+R AK+    G+   P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PGIGAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELARLLPARQRRSLRRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METJA (30S ribosomal protein S19P OS=Methanocaldococcus jannaschii GN=rps19p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.256e-32
Identity = 69/141 (48.94%), Postives = 92/141 (65.25%), Query Frame = -3
Query:  162 KKRTFKK---FSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 575
            KK+   K   F +RG  L+ L  M   E AKL  AR RR   RGL  +   L  K++KA+R    G++P  +RTH R+ +I P+M+G   GVYNGK F +V++ PEMIGHYL EFS++ KPV+HG PG+GAT SS F+P+K
Sbjct:   12 KKQVISKKIEFRYRGYTLEELQQMPLREFAKLLPARQRRTLLRGLTPQQKKLAMKIKKARRLLNKGKEPRIIRTHCRDFVITPDMVGLTFGVYNGKEFVEVKVTPEMIGHYLGEFSLTRKPVQHGAPGMGATRSSMFVPIK 152          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_THEON (30S ribosomal protein S19P OS=Thermococcus onnurineus (strain NA1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.565e-32
Identity = 68/133 (51.13%), Postives = 93/133 (69.92%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F +RG   + LL+MS ++ AKL  AR RR  +RGL  +   L++K+R AK+    G+   P+RTH R+M+I+PEM+G  I VYNGK F  VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTFEELLNMSLEDFAKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMVILPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAIK 133          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METKA (30S ribosomal protein S19P OS=Methanopyrus kandleri GN=rps19p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.910e-31
Identity = 68/137 (49.64%), Postives = 95/137 (69.34%), Query Frame = -3
Query:  162 KRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 572
            ++ + +F +RG  L  L+ M  +E  +L  AR RR  +RGL  +   L++K+R+A+R    G+KP  +RTH R+MII+PEM+G  I VYNGK F +V+I+PEMIGHYL EF+ + K V+HG  GIGAT SS F+PLK
Sbjct:   15 EKEWVEFRYRGYTLGELMKMPIEEFIELLPARQRRSLKRGLPSRHKKLLRKVRRARRLLRRGKKPPVIRTHCRDMIILPEMVGLTIAVYNGKEFKEVKIEPEMIGHYLGEFAKTRKTVEHG--GIGATRSSLFVPLK 149          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_SULTO (30S ribosomal protein S19P OS=Sulfolobus tokodaii GN=rps19p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.112e-30
Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = -3
Query:  162 FKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 563
            +KKF +RG  LD LL+M  DE  KL  +R RR  ++G   K   L++K+RK  RE   G+    ++TH+R+MII+PEM+G    VYNGK F + ++ PEMIGHYL EFSI+ K V+HG PG+ AT SS F+ +K
Sbjct:    9 WKKFRYRGKSLDELLNMPMDEFIKLLPSRQRRSLKKGFSDKQRRLLEKIRKYVRE---GKYSKTIKTHVRDMIILPEMVGLKFAVYNGKEFVEFQVVPEMIGHYLGEFSITTKKVEHGEPGLKATRSSLFLAMK 139          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_THESM (30S ribosomal protein S19P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps19p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.758e-30
Identity = 62/133 (46.62%), Postives = 95/133 (71.43%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F +RG   + L++MS ++L+KL  +R RR  +RGL  +   L++K+R AK+    G+   P+RTH R+M+I+PEM+G +I V+NGK F  V+I+ EMIGHY+ EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFKYRGYTFEELINMSLEDLSKLLPSRQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHSRDMVILPEMVGMMIYVHNGKEFVPVQIREEMIGHYIGEFALTRKRVQHGSPGVGATRSSMFVAIK 133          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METTH (30S ribosomal protein S19P OS=Methanobacterium thermoautotrophicum GN=rps19p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.758e-30
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F +RG  L+ L +M  D++ KLF +R RR  +RG   +   +++K+RK K+E     +P  +RTH R+MI++PEM+G   G++NGK F +V+I+PEMIG Y  EF+ + K V+HG PG+GAT  S F+PLK
Sbjct:    4 KEFRYRGYTLEELQEMPLDDVIKLFPSRQRRSLKRGFLPRQKKVLEKIRKIKKEGKTEGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKEFVEVKIQPEMIGCYFGEFAPTRKKVEHGDPGMGATRFSMFVPLK 136          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_HALMA (30S ribosomal protein S19P OS=Haloarcula marismortui GN=rps19p PE=1 SV=4)

HSP 1 Score: 131.724 bits (330), Expect = 2.758e-30
Identity = 64/132 (48.48%), Postives = 91/132 (68.94%), Query Frame = -3
Query:  162 KFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 557
            +FSFRG  LD L +M  +E+A+L  AR RR   RGL  +   L++K R+A  E       DP+RTHLR+M +VPEM+G    V++G+ F +V+++PEM+GHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFSFRGHTLDELQEMELEEVAELLPARQRRSIVRGLTEEKHKLLEKAREAGEEETAN---DPIRTHLRDMPVVPEMVGLTFAVHDGQNFERVKVEPEMLGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_HALLT (30S ribosomal protein S19P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps19p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.758e-30
Identity = 64/136 (47.06%), Postives = 92/136 (67.65%), Query Frame = -3
Query:  162 RTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            R  K+F++RG  LD L +M  DE+A+L  AR RR   RGL  +   L++K+R   +E       +P+RTHLR+M I+PE +G    VYNG +F +V+++PEMIGH+L EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:    9 REGKEFAYRGHSLDELQEMDVDEVAELLPARQRRSIVRGLGTEQQKLLEKVRSRDKETTAD---NPIRTHLRDMPILPEFVGVTFSVYNGHSFERVQVEPEMIGHFLGEFHLTRSTVEHGQAGIGATRSSKFVPLK 141          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_STAMF (30S ribosomal protein S19P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.602e-30
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = -3
Query:  162 FKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 563
            +KKF +RG  L+ LL+M  DE   L  AR RR  +RGL    + L+ K+RK +++   G+K   ++TH+R+MII+PEMIG  I VYNGK F  V I PEMIGHYL EFS + K V+HG PG+ AT SS FI LK
Sbjct:   11 WKKFRYRGKTLEELLNMPMDEFIGLLPARQRRSLKRGLTMAQVKLLAKIRKVRQKKLTGKKAI-IKTHVRDMIILPEMIGLTIAVYNGKEFIPVRIVPEMIGHYLGEFSPTTKRVQHGEPGLKATRSSMFISLK 143          
The following BLAST results are available for this feature:
BLAST of CN184693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_PYRHO2.256e-3253.3830S ribosomal protein S19P OS=Pyrococcus horikoshi... [more]
RS19_METJA2.256e-3248.9430S ribosomal protein S19P OS=Methanocaldococcus j... [more]
RS19_THEON6.565e-3251.1330S ribosomal protein S19P OS=Thermococcus onnurin... [more]
RS19_METKA1.910e-3149.6430S ribosomal protein S19P OS=Methanopyrus kandler... [more]
RS19_SULTO2.112e-3049.2530S ribosomal protein S19P OS=Sulfolobus tokodaii ... [more]
RS19_THESM2.758e-3046.6230S ribosomal protein S19P OS=Thermococcus sibiric... [more]
RS19_METTH2.758e-3045.8630S ribosomal protein S19P OS=Methanobacterium the... [more]
RS19_HALMA2.758e-3048.4830S ribosomal protein S19P OS=Haloarcula marismort... [more]
RS19_HALLT2.758e-3047.0630S ribosomal protein S19P OS=Halorubrum lacusprof... [more]
RS19_STAMF3.602e-3052.2430S ribosomal protein S19P OS=Staphylothermus mari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184693 ID=CN184693; Name=CN184693; organism=Citrus sinensis; type=EST; length=607bp
CGTTAAGCATTACTCTTGAGCAGAATATCCTTCAAAACTATTTTGCATCA
CACTCTTTCAAAAGCTTTAATTAAAACTGAATCGACAAAAACAGGCAGGT
CCAAAATCATTTTTTGGAGGACAAAACATACCCTCCATAAGGACAGCATG
CAAAATCTTCACTTCAGAGGAATGAACCTAGAAGAGTGGGTAGCACCAAT
ACCAGGTCTTCCGTGCTTAACTGGCTTGTATGAGATCGAGAACTCAGCTA
GATAATGTCCAATCATTTCGGGCTTAATTTCAACTTGATTAAAGGTCTTG
CCATTGTAAACACCAATTATACTACCGATCATTTCAGGCACAATGATCAT
GTTGCGAAGATGAGTCCTAACTGGATCAGGCTTCTCGCCGGGTGGAGCTT
CCCTTTTCGCCTTGCGCAACTTCTTGATCAACGCCATAGGCTTCCTTTTC
AACCCCCTCTGAAACCTTCTGCGAGCACGGGCGCTAAATAGCTTGGCGAG
CTCATCAGTAGACATGTCCAAAAGAGCGTCCAAATCAACACCTCTGAAGC
TGAACTTCTTGAATGTCCTCTTCTTTGGCTGTCCTGCAGCAGCACCAGCA
GCAACCC
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