CN184693

Overview
NameCN184693
Unique NameCN184693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12532 contig Csv1_Contig12532:88..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METS3 (30S ribosomal protein S19P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps19p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.704e-30
Identity = 61/133 (45.86%), Postives = 90/133 (67.67%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K F ++G  L+ L DMS +E+ +LF AR RR  +RG   +   ++ K+RK  +E     +P  +RTH R+MI++PEM+G+  G+YNG+ F +V I+PEMIG Y  EF+ + + V+HG PG+GAT SS F+PLK
Sbjct:    4 KIFKYKGYTLEELQDMSLEEVMELFPARQRRSLKRGFLPRQQIVLDKMRKLNKEGSKDGRPVVIRTHCRDMIVLPEMVGTTFGIYNGQNFVEVTIEPEMIGCYFGEFAPTRQKVQHGDPGMGATRSSMFVPLK 136          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_AERPE (30S ribosomal protein S19P OS=Aeropyrum pernix GN=rps19p PE=3 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 8.025e-30
Identity = 68/136 (50.00%), Postives = 90/136 (66.18%), Query Frame = -3
Query:  162 FKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPG--EKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 563
            +KKF +RG  L+ LL M  +ELA+LF AR RR   RGL      L+ K+RK +R    G  ++P  +RTH+R+M+I+PEM+G  I VYNGK F  V+I PEMIGHYL EFS + + V+HG PG+ AT SS  +  K
Sbjct:    9 WKKFRYRGRTLEELLKMDIEELARLFPARQRRSLLRGLTPAQQKLLLKVRKIRRRLEEGRLKRPPVIRTHVRDMVILPEMVGLTIAVYNGKEFIPVKIVPEMIGHYLGEFSPTTRIVQHGEPGLKATRSSLHVASK 144          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_SULAC (30S ribosomal protein S19P OS=Sulfolobus acidocaldarius GN=rps19p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.048e-29
Identity = 64/134 (47.76%), Postives = 90/134 (67.16%), Query Frame = -3
Query:  162 FKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 563
            +KKF +RG  L+ LL+M  DE  KL  +R RR  +RG   K   L++K+RK  RE   G++   ++TH+RNM+I+PEM+G    VYNGK F + ++ PEMIG YL E+SI+ K V+HG PG+ AT SS F+ +K
Sbjct:    9 WKKFRYRGKSLEDLLNMPMDEFIKLLPSRQRRSLKRGFSDKQRRLLEKIRKISRE---GKQNKVIKTHVRNMVILPEMVGLRFAVYNGKEFVEFQVVPEMIGRYLGEYSITTKKVEHGEPGLKATKSSLFLAMK 139          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_NATPD (30S ribosomal protein S19P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps19p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.335e-29
Identity = 63/132 (47.73%), Postives = 90/132 (68.18%), Query Frame = -3
Query:  162 KFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 557
            +F++RG  LD L +M  DE+A+L  AR RR  +RGL  +   L+ + R+A  E       +P+RTHLR+M I+P  +G    VYNG++F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHTLDELQEMELDEVAELLPARQRRTIKRGLSVEQEKLLDEAREAGEEETAN---NPIRTHLRDMPILPRFVGLTFAVYNGQSFERVEVEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METS5 (30S ribosomal protein S19P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps19p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.983e-29
Identity = 61/134 (45.52%), Postives = 90/134 (67.16%), Query Frame = -3
Query:  162 FKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 563
            +KKF +RG  L+ LL+M  D+  KL  AR RR  ++G       LI+K+RK +R++   +   P++TH+R+++I+PEM+G    VYNGK F + ++ PEMIGHYL EFSI  + V+HG PG+ AT SS F+ +K
Sbjct:    9 WKKFRYRGKSLEELLNMPMDDFIKLLPARQRRSLRKGFTPSERTLIEKIRKIRRDSKADK---PIKTHVRSLVILPEMVGLKFAVYNGKQFVEFQVVPEMIGHYLGEFSIPIQKVEHGEPGLKATRSSLFMAMK 139          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_HYPBU (30S ribosomal protein S19P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps19p PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.793e-29
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -3
Query:  162 FKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 563
            +KKF +RG  L+ LL M  D+  KL  AR RR   RGL      L+ K+RKA+++   G+K   V+TH+R+MII+PEM+G  I VYNGK F  V+I PEMIGHYL EFS + K V+HG PG+ AT S+  + LK
Sbjct:   12 WKKFRYRGYTLEELLAMPMDQFIKLLPARQRRSLLRGLTDAQRRLLWKIRKARQKMLQGKKV-VVKTHVRDMIILPEMVGLTIAVYNGKEFIPVKITPEMIGHYLGEFSPTCKQVQHGEPGLKATRSTLHVALK 144          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_SULSO (30S ribosomal protein S19P OS=Sulfolobus solfataricus GN=rps19p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.159e-28
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = -3
Query:  162 FKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 563
            +K F +RG  +D LL+M  DE  KL  +R RR  +RG       L++K+RK +RE   G+    ++TH+RN++I+PE+IG  + VYNGK F +  + PEMIGHYL E+SI+ K V+HG PG+ AT SS F+ +K
Sbjct:    9 WKNFKYRGKSIDELLNMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRRE---GKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKATRSSLFLAMK 139          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.159e-28
Identity = 60/132 (45.45%), Postives = 90/132 (68.18%), Query Frame = -3
Query:  162 KFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 557
            +F++RG DLD L +MS +++A+L  AR RR   RGL  +   ++ + R++  E       +P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETAN---NPIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.159e-28
Identity = 60/132 (45.45%), Postives = 90/132 (68.18%), Query Frame = -3
Query:  162 KFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 557
            +F++RG DLD L +MS +++A+L  AR RR   RGL  +   ++ + R++  E       +P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETAN---NPIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_THEPD (30S ribosomal protein S19P OS=Thermofilum pendens (strain Hrk 5) GN=rps19p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.513e-28
Identity = 63/136 (46.32%), Postives = 92/136 (67.65%), Query Frame = -3
Query:  162 KFSFRGVDLDALLDMSTDELAKLFSARARRR----FQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 557
            KF++RG  L+ L  M  ++LA++  AR RR     F++G   + + L++K+R+A + A  G+K   ++THLR+ II+PEM+G  I V+NGK F  VEI PE IGHYL EF+++ K V+HG PG+ AT SS F+ LK
Sbjct:    6 KFTYRGYTLEELRQMPIEKLAEIMPARQRRSLLRVFKQGTSEEHLKLLEKIRRAAKLASEGKKQPVIKTHLRDFIILPEMVGLTIHVHNGKEFVPVEITPEKIGHYLGEFALTTKKVEHGEPGLKATRSSMFVALK 141          
The following BLAST results are available for this feature:
BLAST of CN184693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METS34.704e-3045.8630S ribosomal protein S19P OS=Methanobrevibacter s... [more]
RS19_AERPE8.025e-3050.0030S ribosomal protein S19P OS=Aeropyrum pernix GN=... [more]
RS19_SULAC1.048e-2947.7630S ribosomal protein S19P OS=Sulfolobus acidocald... [more]
RS19_NATPD2.335e-2947.7330S ribosomal protein S19P OS=Natronomonas pharaon... [more]
RS19_METS53.983e-2945.5230S ribosomal protein S19P OS=Metallosphaera sedul... [more]
RS19_HYPBU6.793e-2950.7530S ribosomal protein S19P OS=Hyperthermus butylic... [more]
RS19_SULSO1.159e-2846.2730S ribosomal protein S19P OS=Sulfolobus solfatari... [more]
RS19_HALSA1.159e-2845.4530S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_HALS31.159e-2845.4530S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_THEPD1.513e-2846.3230S ribosomal protein S19P OS=Thermofilum pendens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184693 ID=CN184693; Name=CN184693; organism=Citrus sinensis; type=EST; length=607bp
CGTTAAGCATTACTCTTGAGCAGAATATCCTTCAAAACTATTTTGCATCA
CACTCTTTCAAAAGCTTTAATTAAAACTGAATCGACAAAAACAGGCAGGT
CCAAAATCATTTTTTGGAGGACAAAACATACCCTCCATAAGGACAGCATG
CAAAATCTTCACTTCAGAGGAATGAACCTAGAAGAGTGGGTAGCACCAAT
ACCAGGTCTTCCGTGCTTAACTGGCTTGTATGAGATCGAGAACTCAGCTA
GATAATGTCCAATCATTTCGGGCTTAATTTCAACTTGATTAAAGGTCTTG
CCATTGTAAACACCAATTATACTACCGATCATTTCAGGCACAATGATCAT
GTTGCGAAGATGAGTCCTAACTGGATCAGGCTTCTCGCCGGGTGGAGCTT
CCCTTTTCGCCTTGCGCAACTTCTTGATCAACGCCATAGGCTTCCTTTTC
AACCCCCTCTGAAACCTTCTGCGAGCACGGGCGCTAAATAGCTTGGCGAG
CTCATCAGTAGACATGTCCAAAAGAGCGTCCAAATCAACACCTCTGAAGC
TGAACTTCTTGAATGTCCTCTTCTTTGGCTGTCCTGCAGCAGCACCAGCA
GCAACCC
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