CN184693

Overview
NameCN184693
Unique NameCN184693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_PICTO (30S ribosomal protein S19P OS=Picrophilus torridus GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.868e-27
Identity = 60/133 (45.11%), Postives = 90/133 (67.67%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+FS+RG  L+ L +M  +EL  L  ARARR + R +  +   L +KL         G+K + ++TH+R++I++P+ +G  I +YNG ++ + EIKPEMIGHYL EF+++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFSYRGHSLEELQNMELNELLPLLPARARRSYSRQMNHEQEKLYEKLL--------GDKEN-IKTHVRDLIVLPQFVGKTIELYNGNSYIKFEIKPEMIGHYLGEFALTRKEVKHSGPGVGATRSSKFLPLK 151          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_CALMQ (30S ribosomal protein S19P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.868e-27
Identity = 67/134 (50.00%), Postives = 85/134 (63.43%), Query Frame = -3
Query:  162 FKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 563
            +K F +RG   D L+ M  +E  KL  AR RR  +RGL+     L++K+RKAK  A  G K  PVRTH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+I+ K V+HG PG+ AT S+  I  K
Sbjct:   55 WKNFKYRGFTFDELMKMPMNEFIKLLPARQRRTLKRGLRPCHRQLLEKIRKAKAFAAKG-KSIPVRTHCRDMIILPEMVGLTIFVYNGITYIPVPISPWHIGHYLGEFAITTKIVQHGEPGLKATKSTLHIAAK 187          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_PYRIL (30S ribosomal protein S19P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.358e-27
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = -3
Query:  162 FSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 554
            F +RG  L+ LL+M  DE  KL  AR RR  +RGLK +   L++K+RKAK+    G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+I+ K V+HG PG+ AT SS  I  K
Sbjct:   31 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKKLMAQGKKV-VIKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFAITTKIVQHGEPGLKATRSSLHIAAK 160          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_PYRCJ (30S ribosomal protein S19P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.304e-27
Identity = 65/131 (49.62%), Postives = 86/131 (65.65%), Query Frame = -3
Query:  162 FSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 554
            F +RG  L+ LL+M  DE  KL  AR RR  +RGLK +   L++K+RKAKR    G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ + V+HG PG+ AT SS  I  K
Sbjct:   29 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLMAQGKKVT-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTRIVQHGEPGLKATRSSLHIAAK 158          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_CENSY (30S ribosomal protein S19P OS=Cenarchaeum symbiosum GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.304e-27
Identity = 58/133 (43.61%), Postives = 87/133 (65.41%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            KKF +RG   + L  M  D L +LF++R RR   RG+      LI++++ A+     G++ +P++THLR++I++P M G  + V++GK F  VEI  EMIGHYL E+ I+ K V HG PG+GA+ SS ++PLK
Sbjct:    3 KKFEYRGKPAEELESMPLDSLFRLFNSRQRRSLTRGITDGKRKLIREIKDARA----GKEGNPIKTHLRDLIVLPSMTGVTVNVFSGKEFRPVEITTEMIGHYLGEYVITNKRVSHGAPGVGASRSSLYVPLK 131          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METTP (30S ribosomal protein S19P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.850e-26
Identity = 60/148 (40.54%), Postives = 94/148 (63.51%), Query Frame = -3
Query:  162 VAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 605
            +A  A +  PK++  ++F++RG  +  L  M  +E+A+L  +R RR  +RGL ++    + KLR               +THLR+ I++PEM+G ++ ++NGKTF +VEI PEMIGHYL E++++   V HG  G+GAT SS+F+PLK
Sbjct:    1 MAKKAGSKLPKRK--EEFTYRGYRVSELAKMRLEEIAELLPSRQRRTLRRGLSKEHRKFMAKLRAR----------GTAKTHLRDAIVLPEMVGKVVEIHNGKTFQRVEIIPEMIGHYLGEYALTRARVIHGAAGVGATRSSKFVPLK 136          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_META3 (30S ribosomal protein S19P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.850e-26
Identity = 58/139 (41.73%), Postives = 88/139 (63.31%), Query Frame = -3
Query:  162 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 578
            P++R   +F ++G  L  L +M   +  ++  AR RR  ++G+  K   L+ K++KA+R A  G+ P  +RTH R+ +I PEMIG   G+YNGK F +V++  E IG +L EF+ S K V+HG PG+GAT  S F+P+K
Sbjct:   26 PRRRV--EFKYKGFTLGELQEMPIKKFMEIVPARQRRSMKKGITPKQRKLVMKIKKARRLANRGKDPRTIRTHCRDFVITPEMIGLPFGIYNGKEFIEVKLVEEAIGRFLGEFAPSRKVVQHGSPGMGATRGSMFVPIK 162          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_THEAC (30S ribosomal protein S19P OS=Thermoplasma acidophilum GN=rps19p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.416e-26
Identity = 60/133 (45.11%), Postives = 87/133 (65.41%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F+++G  L+ L  MS +EL K+  ARARR   R    +   L++KL   + +         V+TH+R++II+P  +G I+ VYNG ++ + EIKPEMIGHYL EF ++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFTYKGYSLEDLQKMSMEELIKILPARARRTLLREPNYEQKKLMEKLESDEED---------VKTHVRDVIILPNYVGKIVEVYNGNSYFKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METST (30S ribosomal protein S19P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps19p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.416e-26
Identity = 58/133 (43.61%), Postives = 84/133 (63.16%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K F FRG  L+ L +MS DE+ +L  +R RR  +RG   +   ++ K+ K K       +P  ++TH R+MI++P M+G   G+YNG+ F +V I+PEMIG Y  EF+ +   V+HG PG+GAT SS F+PLK
Sbjct:    4 KIFKFRGYTLEELQEMSLDEVIELLPSRQRRSLKRGFLPRQEKVLDKMEKVKDMKNDSGRPIVIKTHCRDMIVLPNMVGYTFGIYNGQEFVEVTIQPEMIGCYFGEFAQTRGRVQHGDPGMGATRSSMFVPLK 136          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_NITMS (30S ribosomal protein S19P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 56/133 (42.11%), Postives = 91/133 (68.42%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F++RG+  + L +MS ++L +LF+AR RR   RG+      LI++++ AK     G+  +P++TH+R++II+P M+   + V++GK F  V I+ EMIGHYL E+ I+ + V HG PG+GA+ SS ++PLK
Sbjct:    3 KEFAYRGIPKEELDNMSLEKLFQLFNARQRRSLTRGITDGKRKLIEEIKAAKA----GKLKNPIKTHVRDLIILPYMVDVTVNVFSGKEFRPVTIRTEMIGHYLGEYVITNRKVSHGAPGVGASRSSLYVPLK 131          
The following BLAST results are available for this feature:
BLAST of CN184693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_PICTO4.868e-2745.1130S ribosomal protein S19P OS=Picrophilus torridus... [more]
RS19_CALMQ4.868e-2750.0030S ribosomal protein S19P OS=Caldivirga maquiling... [more]
RS19_PYRIL6.358e-2750.3830S ribosomal protein S19P OS=Pyrobaculum islandic... [more]
RS19_PYRCJ8.304e-2749.6230S ribosomal protein S19P OS=Pyrobaculum calidifo... [more]
RS19_CENSY8.304e-2743.6130S ribosomal protein S19P OS=Cenarchaeum symbiosu... [more]
RS19_METTP1.850e-2640.5430S ribosomal protein S19P OS=Methanosaeta thermop... [more]
RS19_META31.850e-2641.7330S ribosomal protein S19P OS=Methanococcus aeolic... [more]
RS19_THEAC2.416e-2645.1130S ribosomal protein S19P OS=Thermoplasma acidoph... [more]
RS19_METST2.416e-2643.6130S ribosomal protein S19P OS=Methanosphaera stadt... [more]
RS19_NITMS5.383e-2642.1130S ribosomal protein S19P OS=Nitrosopumilus marit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184693 ID=CN184693; Name=CN184693; organism=Citrus sinensis; type=EST; length=607bp
CGTTAAGCATTACTCTTGAGCAGAATATCCTTCAAAACTATTTTGCATCA
CACTCTTTCAAAAGCTTTAATTAAAACTGAATCGACAAAAACAGGCAGGT
CCAAAATCATTTTTTGGAGGACAAAACATACCCTCCATAAGGACAGCATG
CAAAATCTTCACTTCAGAGGAATGAACCTAGAAGAGTGGGTAGCACCAAT
ACCAGGTCTTCCGTGCTTAACTGGCTTGTATGAGATCGAGAACTCAGCTA
GATAATGTCCAATCATTTCGGGCTTAATTTCAACTTGATTAAAGGTCTTG
CCATTGTAAACACCAATTATACTACCGATCATTTCAGGCACAATGATCAT
GTTGCGAAGATGAGTCCTAACTGGATCAGGCTTCTCGCCGGGTGGAGCTT
CCCTTTTCGCCTTGCGCAACTTCTTGATCAACGCCATAGGCTTCCTTTTC
AACCCCCTCTGAAACCTTCTGCGAGCACGGGCGCTAAATAGCTTGGCGAG
CTCATCAGTAGACATGTCCAAAAGAGCGTCCAAATCAACACCTCTGAAGC
TGAACTTCTTGAATGTCCTCTTCTTTGGCTGTCCTGCAGCAGCACCAGCA
GCAACCC
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