CN184693

Overview
NameCN184693
Unique NameCN184693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_NANEQ (30S ribosomal protein S19P OS=Nanoarchaeum equitans GN=rps19p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.181e-26
Identity = 65/133 (48.87%), Postives = 80/133 (60.15%), Query Frame = -3
Query:  162 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 560
            K+F ++G  L  L  MS +ELAK+  AR RR   R LK       KKL K    A  G+   P++TH RN II+P M+G  + VYNGK +  V+IKPEMIGHYL EFS + K  KH  PGIGAT SS  +  K
Sbjct:    8 KEFRYKGYTLQELEQMSLEELAKIMPARQRRTLLRRLKFGWSDQQKKLFKKILLAKEGKYKKPIKTHARNTIILPFMVGVTVHVYNGKEYVPVQIKPEMIGHYLGEFSFTTKRPKHSAPGIGATRSSAHVSKK 140          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METBU (30S ribosomal protein S19P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps19p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.772e-25
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = -3
Query:  162 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 578
            PK++   +++FRG  +  L +MS ++ A+L  A+ RR  +RG       ++++ R  K         + VRTH RNMII PEMIG  + VYNGK F ++EI PEMIGH   E+S +   V HG  G+GAT SS+F+PLK
Sbjct:   10 PKRKG--EYTFRGKTVAQLQEMSFEDFAELLPAKERRSIRRGFSDSQKGVLQQFRDGK---------ESVRTHFRNMIIFPEMIGKNLEVYNGKEFVKIEIMPEMIGHRFGEYSPTRNRVSHGSAGVGATRSSKFVPLK 137          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.954e-24
Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = -3
Query:  162 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 578
            P++R   +F ++G  L+ L +M   +  ++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.580e-24
Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = -3
Query:  162 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 578
            P++R   +F ++G  L+ L +M   +  ++  +R RR   RG+  K   L+ K++KA+R    G++   +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.122e-23
Identity = 51/139 (36.69%), Postives = 84/139 (60.43%), Query Frame = -3
Query:  162 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 578
            P++R   +F ++G  L+ L +M   +  ++  +R RR   RG+  K   L+ K++KA+R    G+    +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFSLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.122e-23
Identity = 52/139 (37.41%), Postives = 83/139 (59.71%), Query Frame = -3
Query:  162 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 578
            P++R   +F ++G  L+ L +M   +  ++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F  V +  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFRYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 52/145 (35.86%), Postives = 85/145 (58.62%), Query Frame = -3
Query:  162 GAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 596
            G  +  P++R   +F ++G  L  L +M   +  ++  AR RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG  I +Y GK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   18 GQQSTAPRRRV--EFKYKGFTLPELQEMPIKKFIEIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.265e-23
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = -3
Query:  162 RTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 569
            R  ++F++ G  +D L  MS ++L  +  +RARR+  RG       L+  +R              +RTH R+MII+PEMIG  I +YNGK F +VE++PE + HYL EF+++ + V HG  GIGAT SS+F+PLK
Sbjct:   11 RRKEEFTYHGYKIDELRAMSLEDLLPVMPSRARRKVLRGWTIGEEKLLSDIRS---------NGSRIRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.570e-23
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = -3
Query:  162 VAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 605
            +A  +++  PK++   ++++RG  +  L ++S +E A+L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I V+NGK F  VE++PEMIGH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:    1 MAKKSSSRLPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136          
BLAST of CN184693 vs. ExPASy Swiss-Prot
Match: RS19_METAC (30S ribosomal protein S19P OS=Methanosarcina acetivorans GN=rps19p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.621e-22
Identity = 54/148 (36.49%), Postives = 91/148 (61.49%), Query Frame = -3
Query:  162 VAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPDPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 605
            +A  +++  PK++   ++++RG  +  L ++S +E A+L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I ++NGK F  V+++PEM+GH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:    1 MAKKSSSRLPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136          
The following BLAST results are available for this feature:
BLAST of CN184693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_NANEQ9.181e-2648.8730S ribosomal protein S19P OS=Nanoarchaeum equitan... [more]
RS19_METBU7.772e-2543.1730S ribosomal protein S19P OS=Methanococcoides bur... [more]
RS19_METM72.954e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM56.580e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METMP1.122e-2336.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM61.122e-2337.4130S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METVS2.500e-2335.8630S ribosomal protein S19P OS=Methanococcus vannie... [more]
RS19_METHJ4.265e-2341.9130S ribosomal protein S19P OS=Methanospirillum hun... [more]
RS19_METMA5.570e-2338.5130S ribosomal protein S19P OS=Methanosarcina mazei... [more]
RS19_METAC1.621e-2236.4930S ribosomal protein S19P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184693 ID=CN184693; Name=CN184693; organism=Citrus sinensis; type=EST; length=607bp
CGTTAAGCATTACTCTTGAGCAGAATATCCTTCAAAACTATTTTGCATCA
CACTCTTTCAAAAGCTTTAATTAAAACTGAATCGACAAAAACAGGCAGGT
CCAAAATCATTTTTTGGAGGACAAAACATACCCTCCATAAGGACAGCATG
CAAAATCTTCACTTCAGAGGAATGAACCTAGAAGAGTGGGTAGCACCAAT
ACCAGGTCTTCCGTGCTTAACTGGCTTGTATGAGATCGAGAACTCAGCTA
GATAATGTCCAATCATTTCGGGCTTAATTTCAACTTGATTAAAGGTCTTG
CCATTGTAAACACCAATTATACTACCGATCATTTCAGGCACAATGATCAT
GTTGCGAAGATGAGTCCTAACTGGATCAGGCTTCTCGCCGGGTGGAGCTT
CCCTTTTCGCCTTGCGCAACTTCTTGATCAACGCCATAGGCTTCCTTTTC
AACCCCCTCTGAAACCTTCTGCGAGCACGGGCGCTAAATAGCTTGGCGAG
CTCATCAGTAGACATGTCCAAAAGAGCGTCCAAATCAACACCTCTGAAGC
TGAACTTCTTGAATGTCCTCTTCTTTGGCTGTCCTGCAGCAGCACCAGCA
GCAACCC
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