CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:198..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.950e-52
Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 645
            RFEKKGF LKGLK + V+R FAEKHY DLS+KPFF  L++YI SGPVVAMIWEG+ VV TGR IIGATNPAQS PGTIRGD AI  GRN+IHGSD+VESA KEIALWFP+G  NW+SSLH WIYE
Sbjct:   25 RFEKKGFYLKGLKFVNVERAFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGRNVIHGSDAVESANKEIALWFPEGAANWESSLHSWIYE 149          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.619e-50
Identity = 93/125 (74.40%), Postives = 104/125 (83.20%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 645
            RFEKKGF LK LKL+ V+R FAEKHY DLSSKPFF  L++YI SGPVVAM+WEG+ VV TGR IIGATNP  S PGTIRGD A+  GRN+IHGSDS+ESA KEIALWFP+G  +WQSS HPWIYE
Sbjct:   24 RFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGLVDYIISGPVVAMVWEGKSVVTTGRKIIGATNPLVSEPGTIRGDFAVDIGRNVIHGSDSIESANKEIALWFPEGLADWQSSQHPWIYE 148          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSJ (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. japonica GN=NDKR PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.283e-47
Identity = 85/125 (68.00%), Postives = 103/125 (82.40%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 645
            RFEKKGF L+G+K M V+R FA++HY DLS KPFF  L+EYI SGPVVAM+WEG+ VV TGR IIGAT P ++APGTIR D A+  GRN+IHGSDSV++ +KEIALWFP+G   W+S+LHPWIYE
Sbjct:   24 RFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLAEWRSNLHPWIYE 148          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSI (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. indica GN=NDKR PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.283e-47
Identity = 85/125 (68.00%), Postives = 103/125 (82.40%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 645
            RFEKKGF L+G+K M V+R FA++HY DLS KPFF  L+EYI SGPVVAM+WEG+ VV TGR IIGAT P ++APGTIR D A+  GRN+IHGSDSV++ +KEIALWFP+G   W+S+LHPWIYE
Sbjct:   24 RFEKKGFFLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLAEWRSNLHPWIYE 148          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_SYNY3 (Nucleoside diphosphate kinase OS=Synechocystis sp. (strain PCC 6803) GN=ndk PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.163e-40
Identity = 74/126 (58.73%), Postives = 97/126 (76.98%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 645
            RFEKKGF L  +K+MTV +  AEKHYE L+ KPFF  L+ +I S PVVAM+WEG  +V T R +IGAT+P  +APGTIRGD  +  GRNIIHGSD++E+A++EI+LWF D  +N W ++L+PW+YE
Sbjct:   24 RFEKKGFKLVAMKVMTVSQELAEKHYEALNDKPFFSGLVNFICSSPVVAMVWEGNSIVSTSRQMIGATDPHAAAPGTIRGDYGVSVGRNIIHGSDAIETAKREISLWFKDEEVNEWDATLNPWLYE 149          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.519e-40
Identity = 79/126 (62.70%), Postives = 96/126 (76.19%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 645
            RFE KGF L GLKLM V +  AE+HY +   KPFF  L+++ITSGPVVAM+WEG+GVV + R IIGATNP  S PGTIRGD  +  GRNIIHGSD+VE+AQ+EIALWF P   ++W+ +L  WIYE
Sbjct:   24 RFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNSEPGTIRGDYGVDIGRNIIHGSDAVETAQREIALWFQPAELVSWEPTLTSWIYE 149          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_ASPFU (Nucleoside diphosphate kinase OS=Aspergillus fumigatus GN=ndk1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.383e-40
Identity = 77/126 (61.11%), Postives = 96/126 (76.19%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 645
            RFE +GF L  +KL++  +   E+HY DLS KPFF  L+ Y+ SGP+ AM+WEG  VVKTGRTI+GATNP  SAPGTIRGD AI  GRN+ HGSDSVE+A+KEIALWF P+  I+W+S+   W+YE
Sbjct:   26 RFENRGFKLVAMKLVSPPQSQLEQHYADLSDKPFFKGLVSYMLSGPICAMVWEGRDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVENAKKEIALWFKPEELISWKSATFDWVYE 151          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.537e-40
Identity = 76/125 (60.80%), Postives = 96/125 (76.80%), Query Frame = -1
Query:  274 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 645
            RFE+KGFSL  +K++   RPFA+KHY DL  KPF+  L+ Y +SGPVVAM+WEGEGV+K GR +IGAT+P +S PGTIRGDLA+V GRNIIHGSD  E+A+ EI LWF P+  +N+  +   WIY
Sbjct:   26 RFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLVAYWSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVNGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWIY 150          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_NOSP7 (Nucleoside diphosphate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndk PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.843e-40
Identity = 77/126 (61.11%), Postives = 95/126 (75.40%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 645
            RFE KGF+L GLK + V +  AE+HY     +PFFGSL+E+ITS PVVAM+WEG+GVV + R IIGATNP  S PGTIRGD  I  GRN+IHGSD+ E+AQ+EIALWF D   +NWQ  + PW++E
Sbjct:   24 RFETKGFTLVGLKFLKVSKELAEQHYGVHRERPFFGSLVEFITSSPVVAMVWEGDGVVASARKIIGATNPLTSEPGTIRGDFGINIGRNLIHGSDAPETAQQEIALWFKDEELVNWQPHITPWLHE 149          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.843e-40
Identity = 76/126 (60.32%), Postives = 94/126 (74.60%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 645
            RFEKKGF L GLKL    +  AE+HY+DL SKPFF  LI+YITSGPVV M WEG GVV + R +IGATNP  + PGTIRGDLA+ TGRN++HGSDS ++ ++EIALWF +G + +W     PW+ E
Sbjct:  107 RFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFGEGELCSWTPVQEPWLIE 232          
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK1_PEA2.950e-5276.80Nucleoside diphosphate kinase 1 OS=Pisum sativum G... [more]
NDK1_SACOF1.619e-5074.40Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]
NDK1_ORYSJ1.283e-4768.00Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK1_ORYSI1.283e-4768.00Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK_SYNY31.163e-4058.73Nucleoside diphosphate kinase OS=Synechocystis sp.... [more]
NDK_CYAP41.519e-4062.70Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK_ASPFU3.383e-4061.11Nucleoside diphosphate kinase OS=Aspergillus fumig... [more]
NDK3_SPIOL7.537e-4060.80Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]
NDK_NOSP79.843e-4061.11Nucleoside diphosphate kinase OS=Nostoc punctiform... [more]
NDK2_TOBAC9.843e-4060.32Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
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