CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CORJK (Nucleoside diphosphate kinase OS=Corynebacterium jeikeium (strain K411) GN=ndk PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            R EKKG  L  L L T DR  AEKHY + S KPFFG L+++ITS P+VA I EGE  +   R + G T+P + A PGTIRGD A+  G N++HGSDS ESA++EI +WFP+
Sbjct:   25 RIEKKGLKLVELDLRTADRETAEKHYAEHSDKPFFGELVDFITSAPLVAGIVEGESAIAAWRQLAGGTHPVEKATPGTIRGDFALTVGENVVHGSDSPESAEREIGIWFPN 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CHLAD (Nucleoside diphosphate kinase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=ndk PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 63/128 (49.22%), Postives = 86/128 (67.19%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE-GVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI--NWQSSLHPWIYE 645
            RFE++G   +GLKLM VD   A +HY +   K FF  L++YITS PVV  +  G+ G V+  RT++GATNPA++APGTIRGD  +  GRN+IH SDS ES ++E A++F    +  +W  +L  WIYE
Sbjct:   24 RFEQRGLKFQGLKLMQVDEALARRHYAEHEGKSFFEGLVKYITSAPVVVAVVAGKPGTVELVRTMVGATNPAKAAPGTIRGDFGVDIGRNLIHASDSPESGERETAIFFQPHELIGDWNRTLDGWIYE 151          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDKM_COLLI (Nucleoside diphosphate kinase, mitochondrial OS=Columba livia GN=NME4 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 57/118 (48.31%), Postives = 84/118 (71.19%), Query Frame = -1
Query:  295 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQS 645
            RFE++GF L  +KL+  D+   +KHY+ L  KPF+ +L+ Y+TSGP+VAM+WEG  VV++ R ++G T+ A +A GTIRGD ++   RN++H SDSVE+AQ+EI  WF     + W+S
Sbjct:   55 RFERRGFKLVAMKLLQADQGLLDKHYQQLRQKPFYPALLAYMTSGPLVAMVWEGYNVVRSTRAMVGDTDSAVAAAGTIRGDFSMHVSRNVVHASDSVETAQREIGFWFQRNELVAWES 172          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_LISMF (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ndk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.583e-29
Identity = 64/124 (51.61%), Postives = 84/124 (67.74%), Query Frame = -1
Query:  277 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 645
            R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS ESA++EI L+F P   +++Q ++  WI
Sbjct:   24 RIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_FRASC (Nucleoside diphosphate kinase OS=Frankia sp. (strain CcI3) GN=ndk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.583e-29
Identity = 58/109 (53.21%), Postives = 85/109 (77.98%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            R E+KG +L  L+L T++R  AE HY + +SKPFFG L+++ITSGP+VA++ EG   V+  R +IGAT+P ++APG++RGD A+  G+N++HGSDS ESA++EI L+FP
Sbjct:   26 RLERKGLTLVALELRTLERSVAETHYGEHASKPFFGELVDFITSGPLVALVAEGPRAVEASRGLIGATDPVKAAPGSLRGDYALEIGQNLVHGSDSPESAKREIDLFFP 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CORGL (Nucleoside diphosphate kinase OS=Corynebacterium glutamicum GN=ndk PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.583e-29
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNP-AQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+E+ITS P++A I EGE  +   R + G T+P A++ PGTIRGD A+  G N++HGSDS ESA++EI++WFP+
Sbjct:   25 RIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELVEFITSAPLIAGIVEGERAIDAWRQLAGGTDPVAKATPGTIRGDFALTVGENVVHGSDSPESAEREISIWFPN 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CORGB (Nucleoside diphosphate kinase OS=Corynebacterium glutamicum (strain R) GN=ndk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.583e-29
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNP-AQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+E+ITS P++A I EGE  +   R + G T+P A++ PGTIRGD A+  G N++HGSDS ESA++EI++WFP+
Sbjct:   25 RIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELVEFITSAPLIAGIVEGERAIDAWRQLAGGTDPVAKATPGTIRGDFALTVGENVVHGSDSPESAEREISIWFPN 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_THETN (Nucleoside diphosphate kinase OS=Thermoanaerobacter tengcongensis GN=ndk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.986e-29
Identity = 63/110 (57.27%), Postives = 76/110 (69.09%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            R+E KG  LK  K++T      EKHYE+   KPFF  LIEY++SGPV AM+ EGE  VK  R I GAT    + PGTIRGD A  T  N++HGSDSVESA++EIALWFP+
Sbjct:   27 RYENKGLRLKAAKVVTPSIELLEKHYEEHKGKPFFKPLIEYMSSGPVFAMVLEGENAVKLVRMINGATKVEDALPGTIRGDFASSTTYNVVHGSDSVESAKREIALWFPE 136          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_METS3 (Nucleoside diphosphate kinase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=ndk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.986e-29
Identity = 62/113 (54.87%), Postives = 82/113 (72.57%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFE+KG  +  +KLM +D   A+ HY + + KPFFGSLIEYITS P +AM+ EGE  + T R ++GATNP ++  GTIRGD A+ TGRNIIH SDS +SA++EI L+F +  I
Sbjct:   25 RFEEKGLQIVAVKLMQIDEDLAKTHYGEHADKPFFGSLIEYITSSPSLAMVIEGEEAISTIRKLVGATNPLEADLGTIRGDFAMDTGRNIIHASDSPDSAEREINLFFNEDEI 137          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_LISMC (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=ndk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.986e-29
Identity = 63/124 (50.81%), Postives = 84/124 (67.74%), Query Frame = -1
Query:  277 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 645
            R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D A+ T RN+IHGSDS ESA++EI L+F P   +++Q ++  WI
Sbjct:   24 RIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAVHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_CORJK3.509e-2954.95Nucleoside diphosphate kinase OS=Corynebacterium j... [more]
NDK_CHLAD3.509e-2949.22Nucleoside diphosphate kinase OS=Chloroflexus aggr... [more]
NDKM_COLLI3.509e-2948.31Nucleoside diphosphate kinase, mitochondrial OS=Co... [more]
NDK_LISMF4.583e-2951.61Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_FRASC4.583e-2953.21Nucleoside diphosphate kinase OS=Frankia sp. (stra... [more]
NDK_CORGL4.583e-2953.15Nucleoside diphosphate kinase OS=Corynebacterium g... [more]
NDK_CORGB4.583e-2953.15Nucleoside diphosphate kinase OS=Corynebacterium g... [more]
NDK_THETN5.986e-2957.27Nucleoside diphosphate kinase OS=Thermoanaerobacte... [more]
NDK_METS35.986e-2954.87Nucleoside diphosphate kinase OS=Methanobrevibacte... [more]
NDK_LISMC5.986e-2950.81Nucleoside diphosphate kinase OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
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