CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_HALMA (Nucleoside diphosphate kinase OS=Haloarcula marismortui GN=ndk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.986e-29
Identity = 59/128 (46.09%), Postives = 85/128 (66.41%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWFPDGP-INWQSSLHPWIYE 645
            RFE +G  + G K M +D+  AE+HY +   KPFF  L+++ITSGPV AM+WEG+   +  RT++G T+PA+SAPGTIRGD  +  GRN+IHGSD  +    ++EI L+F +   ++W      W+YE
Sbjct:   27 RFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGDYGLDLGRNVIHGSDHEDEGANEREIELFFDEAELVDWDQIDSSWLYE 154          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_FRASN (Nucleoside diphosphate kinase OS=Frankia sp. (strain EAN1pec) GN=ndk PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.817e-29
Identity = 59/109 (54.13%), Postives = 84/109 (77.06%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            R E+KG  +  L+L T++R  AE HY + +SKPFFG L+E+ITSGP+VA++ EG   V+  R +IGAT+P ++APG++RGD A+  G+N+IHGSDS ESA++EI L+FP
Sbjct:   26 RIERKGLKIVALELRTLERSVAETHYGEHASKPFFGELVEFITSGPLVALVAEGPRAVEALRGLIGATDPVKAAPGSLRGDFALEIGQNLIHGSDSPESAKREIDLFFP 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_DEIGD (Nucleoside diphosphate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=ndk PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.817e-29
Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            R +KKG+ + GLK M + R  AE+HY +   +PFFG L+++ITSGPVVA+  EGE  +   R ++GATNPA +APGTIR D A  TG N+ HGSDS ESA +E++L+F
Sbjct:   24 RIQKKGYRVVGLKQMLISRELAERHYAEHRERPFFGELVDFITSGPVVAIALEGENAIAGWRAMMGATNPANAAPGTIRADFATTTGENVTHGSDSPESAARELSLFF 131          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_COREF (Nucleoside diphosphate kinase OS=Corynebacterium efficiens GN=ndk PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.817e-29
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+E+ITS P++A I EGE  +   R + G T+P   A PGTIRGD A+  G N++HGSDS ESA++EI++WFP+
Sbjct:   25 RIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELVEFITSAPLIAGIVEGERAIDAWRQLAGGTDPVSKATPGTIRGDFALTVGENVVHGSDSPESAEREISIWFPN 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_NATPD (Nucleoside diphosphate kinase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.021e-28
Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE-SAQKEIALWFPDGPI-NWQSSLHPWIYE 645
            RFE +G  L   K M +D   A +HY +   KPFF  L E+ITSGPV AM+WEG+  V   RT++G T+PA+SAPGTIRGD  +  GRN+IHGSD+   SA++EI L+F D  + +++    PW+YE
Sbjct:   27 RFEDRGLKLVAGKFMQIDDELAREHYAEHVDKPFFDELKEFITSGPVFAMVWEGQDAVAQVRTMMGETDPAESAPGTIRGDFGLDLGRNVIHGSDTEPGSAEREIGLFFDDDELQDYERIDEPWLYE 153          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_ROSCS (Nucleoside diphosphate kinase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.333e-28
Identity = 61/126 (48.41%), Postives = 85/126 (67.46%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 645
            R E++G  + GLKLM +D   A +HY     KPFF SLI YITSGPVV ++  G  V++  R+++GATNP ++APGTIRGD A+  GRN+IH SDS E+ + E+ L+F  +  ++ + S   WIYE
Sbjct:   24 RIEQRGLRIVGLKLMQIDEALARRHYAIHEGKPFFDSLIAYITSGPVVVLVVTGANVIEMVRSMVGATNPGKAAPGTIRGDFALEIGRNLIHASDSPENGEMEVNLFFRAEELVDMRRSTDQWIYE 149          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_MYCTU (Nucleoside diphosphate kinase OS=Mycobacterium tuberculosis GN=ndkA PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.333e-28
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            R E+KG ++  L+L TV    A +HY +   KPFFGSL+E+ITSGPVVA I EG   +   R + G T+P Q +APGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   25 RIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_MYCTA (Nucleoside diphosphate kinase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.333e-28
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            R E+KG ++  L+L TV    A +HY +   KPFFGSL+E+ITSGPVVA I EG   +   R + G T+P Q +APGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   25 RIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_MYCBT (Nucleoside diphosphate kinase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.333e-28
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            R E+KG ++  L+L TV    A +HY +   KPFFGSL+E+ITSGPVVA I EG   +   R + G T+P Q +APGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   25 RIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_MYCBP (Nucleoside diphosphate kinase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ndk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.333e-28
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            R E+KG ++  L+L TV    A +HY +   KPFFGSL+E+ITSGPVVA I EG   +   R + G T+P Q +APGTIRGD A+ T  N++HGSDS ESAQ+EIALWFP
Sbjct:   25 RIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134          
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_HALMA5.986e-2946.09Nucleoside diphosphate kinase OS=Haloarcula marism... [more]
NDK_FRASN7.817e-2954.13Nucleoside diphosphate kinase OS=Frankia sp. (stra... [more]
NDK_DEIGD7.817e-2953.70Nucleoside diphosphate kinase OS=Deinococcus geoth... [more]
NDK_COREF7.817e-2953.15Nucleoside diphosphate kinase OS=Corynebacterium e... [more]
NDK_NATPD1.021e-2849.61Nucleoside diphosphate kinase OS=Natronomonas phar... [more]
NDK_ROSCS1.333e-2848.41Nucleoside diphosphate kinase OS=Roseiflexus caste... [more]
NDK_MYCTU1.333e-2856.36Nucleoside diphosphate kinase OS=Mycobacterium tub... [more]
NDK_MYCTA1.333e-2856.36Nucleoside diphosphate kinase OS=Mycobacterium tub... [more]
NDK_MYCBT1.333e-2856.36Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]
NDK_MYCBP1.333e-2856.36Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
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