CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_LISW6 (Nucleoside diphosphate kinase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.602e-27
Identity = 59/124 (47.58%), Postives = 85/124 (68.55%), Query Frame = -1
Query:  277 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 645
            + EKKG  L   KL+ +DR  AE+HY +   KPFF  LI +ITSGPV AM+ EG+ V+K  R ++G TNP ++  GTIR + A+ T RN+IHGSDS ESA++EI L+F P   ++++ ++  W+
Sbjct:   24 KIEKKGIKLVAGKLIQIDRKLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKIARRMMGKTNPLEADAGTIRAEYAVHTNRNVIHGSDSPESAKREIQLFFEPHEILSYEKAVDIWV 147          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_NOCFA (Nucleoside diphosphate kinase OS=Nocardia farcinica GN=ndk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.556e-27
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            R E+KG  +  L+L  V    A +HY + + KPFFGSLIE+ITSGPVVA + EG   +   R + G T+P + +APG+IRGD  + T  N++HGSDS ESA++EI LWFP+ P+
Sbjct:   25 RIERKGLKIAALELKQVSDELAREHYAEHADKPFFGSLIEFITSGPVVAAVLEGPRAIAAFRQLAGGTDPVEKAAPGSIRGDFGLETQYNLVHGSDSPESAKREIGLWFPEFPV 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_MYCPA (Nucleoside diphosphate kinase OS=Mycobacterium paratuberculosis GN=ndk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.248e-26
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            R E+KG +L  L+L  V +  A +HY +   KPFF SL+E+ITSGPVVA I EG   +   R + G T+P + A PGTIRGD  + T  N++HGSDSVESA++EI LWFPD
Sbjct:   25 RIERKGLTLVALELRHVSQDLAAQHYAEHEGKPFFASLLEFITSGPVVAAIVEGPRAIAAFRQLAGGTDPVEKAIPGTIRGDFGLETQFNLVHGSDSVESAKREIGLWFPD 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_METST (Nucleoside diphosphate kinase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.248e-26
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            RFEK+G  +   K + +    A+ HY + S KPFF  LI YITSGPV AM+ EG+ V+   R ++GATNP ++  GTIRGD  I TGRNI+H SDS ESAQ+EI L+F +
Sbjct:   25 RFEKRGLKVIAAKTLMISEDLAKTHYGEHSDKPFFNDLISYITSGPVFAMVLEGDDVISLVRKMVGATNPKEADIGTIRGDYGIDTGRNIVHASDSEESAQREINLFFDE 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_THEFY (Nucleoside diphosphate kinase OS=Thermobifida fusca (strain YX) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.630e-26
Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            R E+KG  +  ++L T+D   A+ HYE+   KPFF SL+E+IT GP+VAM+ EG   ++  R++ GAT+P  +APGTIRGD  +    NI+HGSDS  SA++EI L+FPD
Sbjct:   24 RIERKGLKIVAMELRTLDEETAKAHYEEHVEKPFFSSLVEFITGGPLVAMVVEGNRAIEAFRSLAGATDPVLAAPGTIRGDYGLDVQANIVHGSDSTYSAEREIKLFFPD 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_ENCCU (Nucleoside diphosphate kinase OS=Encephalitozoon cuniculi GN=NDK1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.630e-26
Identity = 61/126 (48.41%), Postives = 79/126 (62.70%), Query Frame = -1
Query:  274 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDG--PINWQSSLHPWIY 645
            RFE+KG  L   K +   R   E HY  LSS PFF  ++E + SG V+AM+W G+  V  GR +IG TNP  ++ GTIRGD  + TG+NIIHGSD VE+A+KEI LW  D   P+++      WIY
Sbjct:   24 RFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSFFDK--EWIY 147          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PYRHO (Nucleoside diphosphate kinase OS=Pyrococcus horikoshii GN=ndk PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.129e-26
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR---NIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 645
            RFEKKG  + G+K++ +DR  AEKHYE+   KPFF +LI+YIT  PVV M+ EG   V+  R + GAT+P  +APGTIRGD  +       N+IH SDS ESA++EI+L+F    +        W Y+
Sbjct:   27 RFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPRAADWFYK 154          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_MYCUA (Nucleoside diphosphate kinase OS=Mycobacterium ulcerans (strain Agy99) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.129e-26
Identity = 58/110 (52.73%), Postives = 74/110 (67.27%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            R E+KG ++  L+L  V    A +HY +   KPFFGSL+E+ITS PVVA I EG   +   R + G T+P + A PGTIRGD  + T  N++HGSDS ESAQ+EIALWFP
Sbjct:   25 RIERKGLAIAALELRNVTEELASQHYAEHEGKPFFGSLLEFITSAPVVAAIVEGPRAIAAFRQLAGGTDPVEKATPGTIRGDFGLETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_MYCMM (Nucleoside diphosphate kinase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.129e-26
Identity = 58/110 (52.73%), Postives = 74/110 (67.27%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            R E+KG ++  L+L  V    A +HY +   KPFFGSL+E+ITS PVVA I EG   +   R + G T+P + A PGTIRGD  + T  N++HGSDS ESAQ+EIALWFP
Sbjct:   25 RIERKGLAIAALELRNVTEELASQHYAEHEGKPFFGSLLEFITSAPVVAAIVEGPRAIAAFRQLAGGTDPVEKATPGTIRGDFGLETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_METTH (Nucleoside diphosphate kinase OS=Methanobacterium thermoautotrophicum GN=ndk PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.129e-26
Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = -1
Query:  271 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 645
            RFE +G  +   K++ +    A +HY++   KPFF  L++YITS PV+AM+ EG+  +   R ++GATNPA++  GTIRGD A+ TGRNIIH SDS ESA++EI L+F +  I +++      IYE
Sbjct:   24 RFEDRGLKIVAFKMLQIPEDLAMEHYQEHREKPFFRDLVDYITSAPVIAMVIEGKDCISLIRKMVGATNPAEADLGTIRGDFALETGRNIIHASDSPESAEREIKLFFDESEICSYEMPDREMIYE 149          
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_LISW65.602e-2747.58Nucleoside diphosphate kinase OS=Listeria welshime... [more]
NDK_NOCFA9.556e-2750.00Nucleoside diphosphate kinase OS=Nocardia farcinic... [more]
NDK_MYCPA1.248e-2653.15Nucleoside diphosphate kinase OS=Mycobacterium par... [more]
NDK_METST1.248e-2652.73Nucleoside diphosphate kinase OS=Methanosphaera st... [more]
NDK_THEFY1.630e-2650.00Nucleoside diphosphate kinase OS=Thermobifida fusc... [more]
NDK_ENCCU1.630e-2648.41Nucleoside diphosphate kinase OS=Encephalitozoon c... [more]
NDK_PYRHO2.129e-2646.88Nucleoside diphosphate kinase OS=Pyrococcus horiko... [more]
NDK_MYCUA2.129e-2652.73Nucleoside diphosphate kinase OS=Mycobacterium ulc... [more]
NDK_MYCMM2.129e-2652.73Nucleoside diphosphate kinase OS=Mycobacterium mar... [more]
NDK_METTH2.129e-2646.03Nucleoside diphosphate kinase OS=Methanobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
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