CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PHEZH (Nucleoside diphosphate kinase OS=Phenylobacterium zucineum (strain HLK1) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  307 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 639
            E  G  +   K + + R  AEK YE    +PFFG L+E++TS PVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS+E+A+ EIA +F +  I
Sbjct:   27 EDAGLRIVAQKRIRMSRAQAEKFYEVHKERPFFGELVEFMTSAPVVVQVLEGENAVARYREVMGATNPAQAADGTIRKLYAESVGENSVHGSDSLENAKIEIAQFFTEDEI 137          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_COXBN (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PD 645
            RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD
Sbjct:   26 RFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPD 136          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_COXB1 (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain CbuK_Q154) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PD 645
            RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD
Sbjct:   26 RFEKAGLKIISAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPD 136          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BORPD (Nucleoside diphosphate kinase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            RFE  G  +   +L  + R  AE+ Y     +PFF  L++++ SGPV   + EGEG ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   26 RFENAGLKVIAARLQQLSRADAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGEGAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAAVEVAFFFPE 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_THEAB (Nucleoside diphosphate kinase OS=Thermosipho africanus (strain TCF52B) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFE++G  +  LKL+ + +  AEK YE    K F+  LI+++T GP+VAMI E   V++  R IIG T+P ++  GTIRG+ A+   +N+IH SDS E+ ++E  ++F D  I
Sbjct:   24 RFEQRGIKIVALKLLWMSKQQAEKLYEMHKGKSFYNDLIDFVTGGPIVAMIVEAPRVIEMVRHIIGDTDPLKAGTGTIRGEFALTITKNLIHASDSKENFEREYKIFFSDDEI 136          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_RHOCS (Nucleoside diphosphate kinase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  +   K + + R  AE+ Y   + +PF+G L+ ++ SGPVV  + EGE  V   R I+GATNPA +APGTIR D A     N +HGSDS+E+A  EIA +F
Sbjct:   26 RFEEAGLRIVAQKRIRLTREQAEQFYIVHAERPFYGELVSFMISGPVVVQVLEGENAVARNREIMGATNPANAAPGTIRKDFAESIEANSVHGSDSLENAATEIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PSEE4 (Nucleoside diphosphate kinase OS=Pseudomonas entomophila (strain L48) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 47/108 (43.52%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  +   K+  + +  AE  Y + S++ FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++APGTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   26 RFEEAGLKIVASKIKQLSKAEAEGFYAEHSARGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAAPGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BDEBA (Nucleoside diphosphate kinase OS=Bdellovibrio bacteriovorus GN=ndk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = -1
Query:  322 FEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 642
            FE  G  +   K+  +    AE+ Y +  ++PFFG L+ ++TSGPV+ M  +GEG V   R I+GAT+P ++ PGT+R       G N +HGSDS ESA +E+AL+F
Sbjct:   27 FEANGLKIAAAKITVLTTAKAEEFYAEHKARPFFGELVSFMTSGPVMLMCLQGEGAVLKNREIMGATDPKKANPGTVRAKFGDNVGENAVHGSDSPESAARELALFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_ALCBS (Nucleoside diphosphate kinase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            RFEK G S+  +K++ +    A   Y +   +PFF  L+ ++TSGPVV  + EGE  V   R ++GATNP ++  GTIR D A     N +HGSDS ESA +E+A +F D
Sbjct:   26 RFEKAGLSVVAMKMVHLSDEKAGGFYAEHKERPFFKDLVGFMTSGPVVVQVLEGEDAVAKNRDLMGATNPKEAEAGTIRADFAETIDANAVHGSDSTESAAREVAYFFSD 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK2_PARUW (Nucleoside diphosphate kinase 2 OS=Protochlamydia amoebophila (strain UWE25) GN=ndk2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFEK G  +   K+  +DR  AE  Y     +PFF  L+ ++T+GPV+ M+ EGE  +   R I+GAT+P ++APGTIR D A     N +HGSD+ E+A+ EI  +F
Sbjct:   26 RFEKAGLRIVAAKMKQLDRKDAEGFYAVHKGRPFFEDLVGFMTTGPVMIMVLEGENAINKNREIMGATDPKKAAPGTIRADFAQTIDENAVHGSDAAETAKTEIEYFF 133          
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PHEZH2.280e-2046.85Nucleoside diphosphate kinase OS=Phenylobacterium ... [more]
NDK_COXBN2.280e-2043.24Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_COXB12.280e-2043.24Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_BORPD2.280e-2040.91Nucleoside diphosphate kinase OS=Bordetella petrii... [more]
NDK_THEAB2.977e-2042.48Nucleoside diphosphate kinase OS=Thermosipho afric... [more]
NDK_RHOCS2.977e-2046.30Nucleoside diphosphate kinase OS=Rhodospirillum ce... [more]
NDK_PSEE42.977e-2043.52Nucleoside diphosphate kinase OS=Pseudomonas entom... [more]
NDK_BDEBA2.977e-2042.99Nucleoside diphosphate kinase OS=Bdellovibrio bact... [more]
NDK_ALCBS2.977e-2043.64Nucleoside diphosphate kinase OS=Alcanivorax borku... [more]
NDK2_PARUW2.977e-2043.52Nucleoside diphosphate kinase 2 OS=Protochlamydia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
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