CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_WOLWR (Nucleoside diphosphate kinase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  316 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 639
            E  G  +   K+M + +  AE  YE    +PFFG L+E++TSG V+  +  GE  V   R I+GATNP Q+  GTIRGD A     N +HGSDS+E+A+KEIA +F +
Sbjct:   28 ESSGLKIIAQKMMLLTKKQAELFYEIHKDRPFFGELVEFMTSGSVIVQVLVGENAVSKYRQIMGATNPKQADKGTIRGDFADDISENRVHGSDSLENARKEIAFFFAE 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_WOLTR (Nucleoside diphosphate kinase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  316 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 639
            EK G  +   K+M + +  AE  Y     +PFFG L+E++TSGPV+  +  GE  +   R I+GAT+P Q+  GTIRGD A     N +HGSDS+E+A KEIA +F +
Sbjct:   28 EKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAE 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_ANAMM (Nucleoside diphosphate kinase OS=Anaplasma marginale (strain St. Maries) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = -1
Query:  307 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 639
            E  G  +   ++  +    AE  Y    ++PFF SL+ ++TSGPVV  +  GE  VKT R ++GATNP+++APGTIRGDLA     N +HGSDS+E+A+ EI  +F +  I
Sbjct:   28 EAAGLRIVAQRMCALSHEQAEAFYAVHKARPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDVMGATNPSEAAPGTIRGDLAESIDANCVHGSDSLENAEWEIKFFFKEHEI 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_ANAMF (Nucleoside diphosphate kinase OS=Anaplasma marginale (strain Florida) GN=ndk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = -1
Query:  307 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 639
            E  G  +   ++  +    AE  Y    ++PFF SL+ ++TSGPVV  +  GE  VKT R ++GATNP+++APGTIRGDLA     N +HGSDS+E+A+ EI  +F +  I
Sbjct:   28 EAAGLRIVAQRMCALSHEQAEAFYAVHKARPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDVMGATNPSEAAPGTIRGDLAESIDANCVHGSDSLENAEWEIKFFFKEHEI 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_WOLPM (Nucleoside diphosphate kinase OS=Wolbachia pipientis wMel GN=ndk PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.079e-20
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  316 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 639
            E+ G  +   K+M + +  AE  YE    +PFFG L+E++TSG VV  +  GE  V   R I+GAT+P Q+  GTIRGD A     N +HGSDS+E+A+KEIA +F +
Sbjct:   28 EQSGLKITAQKMMLLTKKQAELFYEIHKDRPFFGELVEFMTSGSVVVQVLVGENAVSKYRQIMGATDPKQADKGTIRGDFADDISENRVHGSDSLENARKEIAFFFAE 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PSEPF (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.079e-20
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE  G  +   KL  + +  AE  Y + S++ FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++APGTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   26 RFEDAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGELVAFMTSGPVVVQVLEGENAIARNRELMGATNPKEAAPGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PHOPR (Nucleoside diphosphate kinase OS=Photobacterium profundum GN=ndk PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.079e-20
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFE  G  +   K++ +D   A+  Y +   KPFF  L+E++TSGPV+  + EGE  +   R ++G TNP  +A GTIR D A+    N +HGSDS ESA +EIA +F +  I
Sbjct:   26 RFENAGLKIVASKMVHLDATKAQGFYAEHEEKPFFNELVEFMTSGPVMVQVLEGEDAIHRYRELMGTTNPENAACGTIRSDFALSMRYNSVHGSDSPESAAREIAYFFTEDEI 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_THEM4 (Nucleoside diphosphate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=ndk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.633e-20
Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFE++G  +  LKL  + R  AE+ YE    K F+  LIE++T GPVVAM+ E   V++  R IIG T+P ++  GTIRG+ A+   +N+IH SDS E+ ++E  ++F +  I
Sbjct:   24 RFEQRGIKIVALKLFWMTREQAERLYEMHKGKNFYNELIEFVTGGPVVAMVVEAPRVIEMVRHIIGNTDPLKAGTGTIRGEFALTVTKNLIHASDSKENFEREYKIFFSENEI 136          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_HAES1 (Nucleoside diphosphate kinase OS=Haemophilus somnus (strain 129Pt) GN=ndk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.633e-20
Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            R E KGF +  +K++ +++  AE  Y + S K FF  LI Y+TS P+V ++ + E  VK  RT +G TNP  +  GT+R + AI   +N +HGSDS+E+AQ+EIA +F +  I
Sbjct:   26 RLEDKGFQIIAMKMLHLNQEQAEGFYTEHSDKAFFAELIRYMTSAPIVVLVLQKENAVKDYRTFMGTTNPEIAENGTLRYEFAINQTQNSVHGSDSLENAQREIAYFFAEAEI 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_RHORT (Nucleoside diphosphate kinase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=ndk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.663e-20
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  + G K + +    AE  YE    + FFGSL+E++TSGPVV  + EGE  V   R ++GATNPA +A  TIR D A     N +HGSDS E+A  EIA +F
Sbjct:   26 RFEEAGLRIVGQKRLRLTTAQAEGFYEVHKERSFFGSLVEFMTSGPVVVQVLEGENAVLKNREVMGATNPANAAEHTIRKDFAESIEANSVHGSDSAENAAHEIAYFF 133          
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_WOLWR3.889e-2045.37Nucleoside diphosphate kinase OS=Wolbachia sp. sub... [more]
NDK_WOLTR3.889e-2044.44Nucleoside diphosphate kinase OS=Wolbachia sp. sub... [more]
NDK_ANAMM3.889e-2044.14Nucleoside diphosphate kinase OS=Anaplasma margina... [more]
NDK_ANAMF3.889e-2044.14Nucleoside diphosphate kinase OS=Anaplasma margina... [more]
NDK_WOLPM5.079e-2045.37Nucleoside diphosphate kinase OS=Wolbachia pipient... [more]
NDK_PSEPF5.079e-2044.44Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_PHOPR5.079e-2042.48Nucleoside diphosphate kinase OS=Photobacterium pr... [more]
NDK_THEM46.633e-2042.48Nucleoside diphosphate kinase OS=Thermosipho melan... [more]
NDK_HAES16.633e-2042.48Nucleoside diphosphate kinase OS=Haemophilus somnu... [more]
NDK_RHORT8.663e-2047.22Nucleoside diphosphate kinase OS=Rhodospirillum ru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
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