CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PSEU5 (Nucleoside diphosphate kinase OS=Pseudomonas stutzeri (strain A1501) GN=ndk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.663e-20
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFEK G  +   K++ +    A   Y + S + FF  L+ ++TSGPV+  + EGE  V   R ++GATNP ++APGTIR D A+    N +HGSDS  SA +EIA +F
Sbjct:   26 RFEKAGLRVVASKMVQLSEREAAGFYAEHSERGFFKDLVAFMTSGPVIVQVLEGENAVAKNRELMGATNPKEAAPGTIRADFAVSIDENAVHGSDSEASAAREIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_METCA (Nucleoside diphosphate kinase OS=Methylococcus capsulatus GN=ndk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.663e-20
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFEK G  +   K+  + R  AE  Y     +PFF  L+ ++ SGPV+  + EGE  +   R ++GATNP  +APGTIR D A+    N +HGSD  E+A +EIA +F
Sbjct:   26 RFEKAGLRIVAAKMAQLSREQAEGFYAVHRERPFFNDLVSFMISGPVMIQVLEGENAIAKNRELMGATNPRDAAPGTIRADFAVSIDENAVHGSDGPETAAQEIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_HAHCH (Nucleoside diphosphate kinase OS=Hahella chejuensis (strain KCTC 2396) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.131e-19
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFEK G  +   K++ + +  AE  Y +   + FF  L+ ++TSGPVV    EGE  +   R ++GATNP ++ PGTIR D A     N +HGSDS  SA++E+A +F +  I
Sbjct:   26 RFEKAGLRIVAAKMLHLSQEQAEGFYAEHKERGFFPDLVAFMTSGPVVVQALEGENAIALNRQLMGATNPKEAEPGTIRADFASSIDANAVHGSDSAASAEREVAYFFSENEI 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CHLAB (Nucleoside diphosphate kinase OS=Chlamydophila abortus GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.131e-19
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  322 FEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 642
            FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG   V   R I+GATNP ++APGTIR       G N +HGSDS+E+A  EI  +F
Sbjct:   25 FEKSGFRIAAMKMLHLSVKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGNNAVARNREIMGATNPQEAAPGTIRAQFGESIGINAVHGSDSLENAAIEINYFF 131          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CAMC5 (Nucleoside diphosphate kinase OS=Campylobacter curvus (strain 525.92) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.131e-19
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE  G  +   K + + +  A+  Y   S +PFF  L+E++TSGPVV M+ EGE  V   R ++GATNP ++A GTIR D A     N +HGSDS+E+A  EI  +F
Sbjct:   24 RFESNGLRIAAAKKVKLSKCDAKAFYAVHSERPFFNDLVEFMTSGPVVVMVLEGENAVAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSLENAINEINFFF 131          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BORA1 (Nucleoside diphosphate kinase OS=Bordetella avium (strain 197N) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.131e-19
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            RFE+ G  +   +L  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   26 RFEQAGLKVIAARLQQLSRADAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGENAIQVNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_ACIAD (Nucleoside diphosphate kinase OS=Acinetobacter sp. (strain ADP1) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.131e-19
Identity = 50/108 (46.30%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFEK G     +K   + +  AE  Y +   + FF  L+ ++TSGPVV    EGE  V   R I+GATNP ++APGTIR D A     N  HGSDSV SA++EIA +F
Sbjct:   26 RFEKAGLKPVAMKYKHLSQAEAEGFYAEHKERGFFADLVAFMTSGPVVVSALEGENAVLAHREILGATNPKEAAPGTIRADFATSIDENAAHGSDSVASAEREIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_VEREI (Nucleoside diphosphate kinase OS=Verminephrobacter eiseniae (strain EF01-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.478e-19
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            RFE  G  +   +++ + RP AE+ Y     +PFF  L+E++ SGPV+  + EGE  V   R ++GAT+P ++  GTIR D A     N +HGSD+ E+AQ E+A +FP
Sbjct:   26 RFEAAGLKIVAARMVHLARPEAERFYAVHKERPFFKDLVEFMISGPVMVQVLEGENAVLKNRELMGATDPKKAQTGTIRADFADSIDANAVHGSDAAETAQAEVAFFFP 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PSEMY (Nucleoside diphosphate kinase OS=Pseudomonas mendocina (strain ymp) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.478e-19
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFEK G  +   K++ +    A   Y + S + FF  L+ ++TSGPV+  + EGE  V   R ++GATNP ++APGTIR D A+    N +HGSDS  SA +EIA +F
Sbjct:   26 RFEKAGLRVVASKMVQLSEREAAGFYAEHSERGFFKDLVAFMTSGPVIVQVLEGEDAVLKNRELMGATNPKEAAPGTIRADFAVSIDENAVHGSDSEASAAREIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CAMHC (Nucleoside diphosphate kinase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.930e-19
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE  G  +   K + + +  A + Y     + FF  L++Y+TSGPVV M+ EGE  V   R ++GAT+P ++APGTIR D A     N +HGSDS E+A+ EIA +F
Sbjct:   24 RFESAGLRIAAAKKIKLSKCDASQFYAIHKERSFFNDLVDYMTSGPVVVMVLEGENAVAKNRELMGATDPKKAAPGTIRADFAESIDANAVHGSDSEENAKNEIAFFF 131          
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PSEU58.663e-2043.52Nucleoside diphosphate kinase OS=Pseudomonas stutz... [more]
NDK_METCA8.663e-2042.59Nucleoside diphosphate kinase OS=Methylococcus cap... [more]
NDK_HAHCH1.131e-1940.71Nucleoside diphosphate kinase OS=Hahella chejuensi... [more]
NDK_CHLAB1.131e-1944.86Nucleoside diphosphate kinase OS=Chlamydophila abo... [more]
NDK_CAMC51.131e-1944.44Nucleoside diphosphate kinase OS=Campylobacter cur... [more]
NDK_BORA11.131e-1940.00Nucleoside diphosphate kinase OS=Bordetella avium ... [more]
NDK_ACIAD1.131e-1946.30Nucleoside diphosphate kinase OS=Acinetobacter sp.... [more]
NDK_VEREI1.478e-1941.28Nucleoside diphosphate kinase OS=Verminephrobacter... [more]
NDK_PSEMY1.478e-1943.52Nucleoside diphosphate kinase OS=Pseudomonas mendo... [more]
NDK_CAMHC1.930e-1943.52Nucleoside diphosphate kinase OS=Campylobacter hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
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