CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_SILST (Nucleoside diphosphate kinase OS=Silicibacter sp. (strain TM1040) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.292e-19
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            +FE+ G  +   K + + +  A K Y   + +PF+  L E+++S PVV  + EGEG +   R I+GATNPA +APGTIR + A   G N +HGSD+ E+A +EIA +F
Sbjct:   26 KFEEAGLRIVAQKRIHMTKAQAGKFYAVHAERPFYDELCEFMSSAPVVVQVLEGEGAIAKNREIMGATNPADAAPGTIRAEFAESVGENSVHGSDAPETAAEEIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PSEPW (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain W619) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.292e-19
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   26 RFEEAGLKIVASKIKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PSEPK (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain KT2440) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.292e-19
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   26 RFEEAGLKIVASKMKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PSEP1 (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.292e-19
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   26 RFEEAGLKIVASKMKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PARD8 (Nucleoside diphosphate kinase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.292e-19
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFEKKG  L G+K++ +      +HY  L  KPFF  + + ++  PV+   WEG   +   RT+ G TN   +APGTIRGD ++    NI+H SDS E+A+ E+  +F D  I
Sbjct:   24 RFEKKGLRLAGMKMVWLTDEILSEHYAHLKEKPFFQRIKDAMSVCPVIVCCWEGVDAIHVVRTLAGTTNGRNAAPGTIRGDYSMSVQENIVHASDSPETAEIELKRFFKDDEI 136          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_HAES2 (Nucleoside diphosphate kinase OS=Haemophilus somnus (strain 2336) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.292e-19
Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            R E KGF +  +K++ +++  AE  Y +  +K FF  L++Y+TS P+V ++ + E  VK  RT +G TNP  +  GT+R + AI   +N +HGSDS+E+AQ+EIA +F +  I
Sbjct:   26 RLEDKGFQIIAMKMLHLNQEQAEGFYAEHRNKAFFTELVKYMTSAPIVVLVLQKENAVKDYRTFMGTTNPEIAENGTLRYEFAINQTQNSVHGSDSLENAQREIAYFFAEAEI 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CHLFF (Nucleoside diphosphate kinase OS=Chlamydophila felis (strain Fe/C-56) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.292e-19
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = -1
Query:  322 FEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 642
            FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG+  V   R I+GATNP ++A GTIR       G N +HGSDS+E+A  EI+ +F
Sbjct:   25 FEKAGFRIAAMKMVHLSAKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGDNAVVRNREIMGATNPQEAAQGTIRAQFGESIGINAVHGSDSLENAAIEISYFF 131          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CAMJE (Nucleoside diphosphate kinase OS=Campylobacter jejuni GN=ndk PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.292e-19
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  I EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:   24 RFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIEFFFKPNEI 136          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_VIBSL (Nucleoside diphosphate kinase OS=Vibrio splendidus (strain LGP32) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            R EK G  +   K++++    A   Y +   K FFG L E++TSGP++  + EGE  +   R ++G TNP ++A GTIR D AI    N +HGSDS ESA +EI  +FP+  I
Sbjct:   26 RIEKAGLQIIAAKMVSLTEAQASGFYAEHEGKEFFGPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTIRADYAISMRYNSVHGSDSPESAAREIEFFFPESEI 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PERMH (Nucleoside diphosphate kinase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  322 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 639
            ++KGF L  LK + + +  A++ Y     +PF+  L E+++SGP+VAM+WEGE  +   R I+GATNP ++  GT+R       G N +HGSDS ESA+ EI  +F
Sbjct:   28 QEKGFKLVALKKLKLTKEQAQQFYIVHKDRPFYDELCEFMSSGPIVAMVWEGENAISRIREIMGATNPEEAEEGTLRKLYGTNVGENAVHGSDSPESAKVEIPFFF 133          
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SILST3.292e-1942.59Nucleoside diphosphate kinase OS=Silicibacter sp. ... [more]
NDK_PSEPW3.292e-1942.59Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEPK3.292e-1942.59Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEP13.292e-1942.59Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PARD83.292e-1940.71Nucleoside diphosphate kinase OS=Parabacteroides d... [more]
NDK_HAES23.292e-1940.71Nucleoside diphosphate kinase OS=Haemophilus somnu... [more]
NDK_CHLFF3.292e-1943.93Nucleoside diphosphate kinase OS=Chlamydophila fel... [more]
NDK_CAMJE3.292e-1942.48Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_VIBSL4.299e-1941.59Nucleoside diphosphate kinase OS=Vibrio splendidus... [more]
NDK_PERMH4.299e-1942.45Nucleoside diphosphate kinase OS=Persephonella mar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
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