CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CAMJJ (Nucleoside diphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = -1 
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:   24 RFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIEFFFKPNEI 136
[Close]
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CAMJD (Nucleoside diphosphate kinase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = -1 
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:   24 RFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIEFFFKPNEI 136
[Close]
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BRUSU (Nucleoside diphosphate kinase OS=Brucella suis GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   26 KLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWF 133
[Close]
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BRUSI (Nucleoside diphosphate kinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   26 KLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWF 133
[Close]
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BRUO2 (Nucleoside diphosphate kinase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   26 KLEEAGLRVVASKRVWMSRREAEGFYTVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWF 133
[Close]
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BRUMB (Nucleoside diphosphate kinase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   26 KLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWF 133
[Close]
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BRUC2 (Nucleoside diphosphate kinase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   26 KLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWF 133
[Close]
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BRUAB (Nucleoside diphosphate kinase OS=Brucella abortus GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   26 KLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWF 133
[Close]
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BRUA2 (Nucleoside diphosphate kinase OS=Brucella abortus (strain 2308) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   26 KLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWF 133
[Close]
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BRUA1 (Nucleoside diphosphate kinase OS=Brucella abortus (strain S19) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -1 
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   26 KLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWF 133
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_CAMJJ4.299e-1941.59Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_CAMJD4.299e-1941.59Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_BRUSU4.299e-1941.67Nucleoside diphosphate kinase OS=Brucella suis GN=... [more]
NDK_BRUSI4.299e-1941.67Nucleoside diphosphate kinase OS=Brucella suis (st... [more]
NDK_BRUO24.299e-1941.67Nucleoside diphosphate kinase OS=Brucella ovis (st... [more]
NDK_BRUMB4.299e-1941.67Nucleoside diphosphate kinase OS=Brucella melitens... [more]
NDK_BRUC24.299e-1941.67Nucleoside diphosphate kinase OS=Brucella canis (s... [more]
NDK_BRUAB4.299e-1941.67Nucleoside diphosphate kinase OS=Brucella abortus ... [more]
NDK_BRUA24.299e-1941.67Nucleoside diphosphate kinase OS=Brucella abortus ... [more]
NDK_BRUA14.299e-1941.67Nucleoside diphosphate kinase OS=Brucella abortus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
back to top