CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BEII9 (Nucleoside diphosphate kinase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  322 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 639
            EK G  +   K + + +  AE  Y   S++PFFG L+E + SGPVV  + EGE  +K  R ++GAT+PA++  GTIR + A+  G N  HGSD+ E+A  EIA WF
Sbjct:   28 EKAGLRIIAQKRVLITKAQAETFYAVHSARPFFGELVESMISGPVVVQVLEGEDAIKKYREVLGATDPAKADAGTIRKEFALSVGENSAHGSDAPETAAVEIAQWF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_AGRRK (Nucleoside diphosphate kinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  307 FEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 642
            FE  G  +   K + + +  AE  Y     +PFFG L++ +TSGP V  + EGEG +   R I+GATNPA +A GTIR   A+  G N +HGSD+ E+A  EIA WF +  I
Sbjct:   27 FEDNGLRVIASKRVWMSKREAEGFYAVHKERPFFGELVDGMTSGPTVVQVLEGEGAILKNREIMGATNPANAAEGTIRKIHALSIGENSVHGSDAPETAAVEIAYWFSETEI 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_ACIAC (Nucleoside diphosphate kinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            RFE  G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV+  + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+AQ E++ +FP
Sbjct:   26 RFEAAGLKIAAARMAHLSRQEAEQFYAVHKERPFFKDLVDFMISGPVMIQVLEGENAILKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVSFFFP 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_SULNB (Nucleoside diphosphate kinase OS=Sulfurovum sp. (strain NBC37-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE  G  +   K   + R  AE  Y   + +PFF  L++++ SGPVV  + EGE  +   R ++GATNPA++ PGTIR D A     N +HGSDSVE+A+ EI  +F
Sbjct:   24 RFEAAGLRIAATKKTRLSRVDAEAFYAIHAERPFFKDLVDFMISGPVVVTVLEGENAMAKNRELMGATNPAEAEPGTIRADFADSIDANAVHGSDSVENAEIEINFFF 131          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PARDP (Nucleoside diphosphate kinase OS=Paracoccus denitrificans (strain Pd 1222) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            +FE+ G  +   K + +    A + Y +   +PF+G L E++TS PVV  + EGEG +   R ++GATNPA +  GTIR + A+  G N +HGSDS E+A +EIA +F
Sbjct:   26 KFEEAGLRIVAQKRIQLTLAQAGQFYAEHKERPFYGELTEFMTSEPVVVQVLEGEGAILKNREVMGATNPANADEGTIRKEFALSVGENSVHGSDSPEAAAREIAFFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_NOVAD (Nucleoside diphosphate kinase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  322 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 639
            E+ G  +   K + + R  AE  Y     +PFFG L+E++ SGPVV  + EGE  VK  R I+GATNP  +APGTIR +LA     N +HGSDS E+A  EIA +F
Sbjct:   28 EEAGLRVVASKRIHMSREQAEGFYAVHKERPFFGELVEFMISGPVVVQVLEGEDAVKRNRDIMGATNPKDAAPGTIRKELAESIEANSVHGSDSEENAAIEIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_NEIMF (Nucleoside diphosphate kinase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  +   K+  +    A++ Y     +PF+  L+E++T GPV+  + EGE  V   R ++GATNP+++A GTIR D A     N +HGSDSVE+A  EIA +F
Sbjct:   26 RFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGTIRADFATSVSINAVHGSDSVENAALEIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_NEIMB (Nucleoside diphosphate kinase OS=Neisseria meningitidis serogroup B GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  +   K+  +    A++ Y     +PF+  L+E++T GPV+  + EGE  V   R ++GATNP+++A GTIR D A     N +HGSDSVE+A  EIA +F
Sbjct:   26 RFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGTIRADFATSVSINAVHGSDSVENAALEIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_NEIMA (Nucleoside diphosphate kinase OS=Neisseria meningitidis serogroup A GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  +   K+  +    A++ Y     +PF+  L+E++T GPV+  + EGE  V   R ++GATNP+++A GTIR D A     N +HGSDSVE+A  EIA +F
Sbjct:   26 RFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGTIRADFATSVSINAVHGSDSVENAALEIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CAMJR (Nucleoside diphosphate kinase OS=Campylobacter jejuni (strain RM1221) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:   24 RFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIDFFFKPNEI 136          
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BEII94.299e-1944.34Nucleoside diphosphate kinase OS=Beijerinckia indi... [more]
NDK_AGRRK4.299e-1943.75Nucleoside diphosphate kinase OS=Agrobacterium rad... [more]
NDK_ACIAC4.299e-1939.45Nucleoside diphosphate kinase OS=Acidovorax avenae... [more]
NDK_SULNB5.615e-1943.52Nucleoside diphosphate kinase OS=Sulfurovum sp. (s... [more]
NDK_PARDP5.615e-1941.67Nucleoside diphosphate kinase OS=Paracoccus denitr... [more]
NDK_NOVAD5.615e-1947.17Nucleoside diphosphate kinase OS=Novosphingobium a... [more]
NDK_NEIMF5.615e-1941.67Nucleoside diphosphate kinase OS=Neisseria meningi... [more]
NDK_NEIMB5.615e-1941.67Nucleoside diphosphate kinase OS=Neisseria meningi... [more]
NDK_NEIMA5.615e-1941.67Nucleoside diphosphate kinase OS=Neisseria meningi... [more]
NDK_CAMJR5.615e-1941.59Nucleoside diphosphate kinase OS=Campylobacter jej... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
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