CN184682

Overview
NameCN184682
Unique NameCN184682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_CAMJ8 (Nucleoside diphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:   24 RFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIDFFFKPNEI 136          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BRUME (Nucleoside diphosphate kinase OS=Brucella melitensis GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   26 KLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKAFALSIGENSVHGSDAPETAAEEIAYWF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_VIBHB (Nucleoside diphosphate kinase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.334e-19
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  307 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 645
            R EK G  +   K++ +    A   Y +   KPFF +L E++TSGP++  + EGE  +   R ++G TNP ++A GTIR D A+    N +HGSDS ESA +EI  +FP+  I
Sbjct:   26 RIEKAGLRIVAAKMVHLTEEQASGFYAEHEGKPFFPALKEFMTSGPIMVQVLEGEDAIARYRELMGKTNPEEAACGTIRADYALSMRHNSVHGSDSPESAAREIEFFFPESEI 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_THIDA (Nucleoside diphosphate kinase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.334e-19
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  319 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 645
            RFE  G  +   K+  + R  AE  Y     +PFF  L++++ SGPVV  + EGE  +   RT++GAT+P ++ PGTIR D A     N +HGSD+ E+A  EIA +FP
Sbjct:   26 RFETNGLKVVASKMKHLSRQEAEGFYAVHKDRPFFKDLVDFMVSGPVVLQVLEGEDAIAKNRTLMGATDPKKAEPGTIRADFAESIDANAVHGSDAPETAAVEIAYFFP 134          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PSYA2 (Nucleoside diphosphate kinase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.334e-19
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFEK G  +   K+M +D   A   Y + + +PF+  L  ++ SGPV+  + EGE  +   R I+GATNP  +A GTIR D A     N +HGSDS ESA +EI+ +F
Sbjct:   26 RFEKSGLKIVAAKMMQLDDEKAGGFYAEHAERPFYNDLKSFMMSGPVLVSVLEGENAIAKHREIMGATNPKDAAEGTIRADFASSIDENAVHGSDSAESAAREISYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PSEFS (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain SBW25) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.334e-19
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   26 RFEKAGLKVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREISYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_PSEF5 (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.334e-19
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   26 RFEEAGLRVVASKMKQLSKAEAEGFYAEHSERGFFGELVAFMTSGPVVVQVLEGENAIVRNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_NEIG2 (Nucleoside diphosphate kinase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.334e-19
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -1
Query:  322 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 645
            RFE+ G  +   K+  +    A++ Y     +PF+  L+E++T GPV+  + EGE  V   R ++GATNP ++A GTIR D A     N +HGSDSVE+A  EIA +F
Sbjct:   26 RFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPTEAAEGTIRADFATSVSINAVHGSDSVENAALEIAYFF 133          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_METS4 (Nucleoside diphosphate kinase OS=Methylobacterium sp. (strain 4-46) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.334e-19
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = -1
Query:  307 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 639
            E+ G  +   + + +    A+  YE  + +PF+G L+ ++TSGPVV  + EG+  V   R ++GATNPAQ+A GTIR   A+  G N +HGSDS E+A  EIA +F +  I
Sbjct:   28 EEAGLRIVAQRRIRMSEAQAKTFYEVHAERPFYGELVSFMTSGPVVVQVLEGDNAVAKYREVMGATNPAQAAEGTIRKRFAVSVGENSVHGSDSAENAAIEIAQFFTEADI 138          
BLAST of CN184682 vs. ExPASy Swiss-Prot
Match: NDK_BURP8 (Nucleoside diphosphate kinase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=ndk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.334e-19
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = -1
Query:  316 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 645
            RFE  G  +   +++ + R  AEK Y   +++PFF  L+E++ SGPV   + EGEG +   R ++GAT+P ++  GTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   26 RFENAGLKIVASRMVHLSRADAEKFYAVHAARPFFKDLVEFMISGPVQVQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
The following BLAST results are available for this feature:
BLAST of CN184682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_CAMJ85.615e-1941.59Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_BRUME5.615e-1941.67Nucleoside diphosphate kinase OS=Brucella melitens... [more]
NDK_VIBHB7.334e-1940.71Nucleoside diphosphate kinase OS=Vibrio harveyi (s... [more]
NDK_THIDA7.334e-1942.20Nucleoside diphosphate kinase OS=Thiobacillus deni... [more]
NDK_PSYA27.334e-1942.59Nucleoside diphosphate kinase OS=Psychrobacter arc... [more]
NDK_PSEFS7.334e-1942.59Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_PSEF57.334e-1942.59Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_NEIG27.334e-1941.67Nucleoside diphosphate kinase OS=Neisseria gonorrh... [more]
NDK_METS47.334e-1941.44Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_BURP87.334e-1940.00Nucleoside diphosphate kinase OS=Burkholderia phym... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184682 ID=CN184682; Name=CN184682; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTCTCACAAAACATAAAAAGTGCAACCATCATGTGCTAACCATTAA
CAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAATATTGTATATG
GCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATTGGTCTCAATTT
AACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGG
AAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTC
CTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTG
CCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCAC
TCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCGTCACGATAGCC
AAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCC
AATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAG
CAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGC
TTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGT
CATAAGCTTCAAACCCTTCAAAGAGAAACCCTTCTTCTCAAATCTGAT
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