CN184679

Overview
NameCN184679
Unique NameCN184679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length280
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2453 contig Csv1_Contig2453:74..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.817e-18
Identity = 41/74 (55.41%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            S +GAAYGT+KSG G+ +M VMRPEL+M SI+PVVMAG++ IYGL++AV+I+  +   +K Y L+ G+ HL +G
Sbjct:   28 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSK-YSLYRGFIHLGAG 100          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL2_KLULA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Kluyveromyces lactis GN=VMA11 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.817e-18
Identity = 38/74 (51.35%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            SC+GAA GT+KSG+G++ +G  +PEL+M S++PVVM+G+L +YGL++AV+I+ G++   + Y LF+G+ HLS G
Sbjct:   30 SCLGAAIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILAVYGLVVAVLIAGGLS-PTEDYTLFNGFMHLSCG 102          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_AEDAE (V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.679e-18
Identity = 41/74 (55.41%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            S +GAAYGT+KSG G+ +M VMRPEL+M SI+PVVMAG++ IYGL++AV+I+  ++   K Y L+ G+ HL +G
Sbjct:   26 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTK-YSLYKGFIHLGAG 98          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL2_YEAST (V-type proton ATPase subunit c' OS=Saccharomyces cerevisiae GN=VMA11 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            SC+GAA GT+KSG+G+  +G  +PEL+M S++PVVM+G+L IYGL++AV+I+  ++   + Y LF+G+ HLS G
Sbjct:   30 SCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLS-PTEDYTLFNGFMHLSCG 102          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL2_CANGA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Candida glabrata GN=VMA11 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            SC+GAA GT+KSG+G+  +G  +PEL+M S++PVVM+G+L IYGL++AV+I+  ++   + Y LF+G+ HLS G
Sbjct:   30 SCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLS-PTEEYTLFNGFMHLSCG 102          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa GN=vma-3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.384e-17
Identity = 37/74 (50.00%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            +C+GA+YGT+KSGVG+ +MGV+RP+L++ +IVPV+MAG++GIYGL+++V+IS  +      Y L+ G+  L +G
Sbjct:   24 TCLGASYGTAKSGVGIAAMGVLRPDLIVKNIVPVIMAGIIGIYGLVVSVLISDALTQ--DHYALYTGFIQLGAG 95          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL2_DEBHA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Debaryomyces hansenii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.384e-17
Identity = 36/74 (48.65%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            SC GAA GT+KSG+G++ +G  +PEL+M S++PVVM+G+L +YGL+++V+I+ G++   ++Y LF+G+ HL+ G
Sbjct:   29 SCAGAAIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILSVYGLVVSVLIAGGLS-PTENYSLFNGFMHLACG 101          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL2_ASHGO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Ashbya gossypii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.114e-17
Identity = 36/74 (48.65%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            S +GAA GT+KSG+G++ +G  RPEL+M S++PVVM+G+L +YGL++AV+++ G++   + Y LF+G+ HL++G
Sbjct:   29 SSLGAAIGTAKSGIGISGIGTFRPELIMKSLIPVVMSGILAVYGLVVAVLVAGGLS-PTEEYTLFNGFMHLAAG 101          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.671e-16
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            S +GAAYGT+KSG G+ +M VMRPEL+M SI+PVVMAG++ IYGL++AV+I+   N   +   LF  +  L +G
Sbjct:   25 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTEDISLFKSFLQLGAG 95          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.671e-16
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLF 252
            S +GAAYGT+KSG G+ +M VMRPE++M SI+PVVMAG++ IYGL++AV+I+  +N     Y  F
Sbjct:   26 SALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDGISLYRSF 90          
The following BLAST results are available for this feature:
BLAST of CN184679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_DROME2.817e-1855.41V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_KLULA2.817e-1851.35V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_AEDAE3.679e-1855.41V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_YEAST1.398e-1751.35V-type proton ATPase subunit c' OS=Saccharomyces c... [more]
VATL2_CANGA1.398e-1751.35V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_NEUCR2.384e-1750.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_DEBHA2.384e-1748.65V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL2_ASHGO3.114e-1748.65V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_TORMA7.671e-1652.70V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SHEEP7.671e-1655.38V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184679 ID=CN184679; Name=CN184679; organism=Citrus sinensis; type=EST; length=280bp
GAGGATGAAACGGAACCGTTCTTCGGCTTCCTCGGCGCTGCCGCCGCCCT
TGTCTTCTCCTGTATGGGAGCTGCATATGGAACATCCAAGAGTGGTGTTG
GTGTGACGTCAATGGGTGTTATGAGGCCTGAGCTGATGATGAATTCGATT
GTGCCAGTTGTTATGGCTGGTGTTTTGGGTATATATGGTTTGATTATTGC
TGTTATTATCAGTACTGGGATTAACCACAAGGCCAAGTCATATTACCTTT
TTGATGGCTATGCTCATCTCTCCTCCGGTT
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