CN184679

Overview
NameCN184679
Unique NameCN184679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length280
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2453 contig Csv1_Contig2453:74..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.671e-16
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 1
Query:  151 VPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            VPVVMAGVLGIYGLIIAVIISTGIN KAK YYLFDGYAHLSSG
Sbjct:    1 VPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSG 43          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.671e-16
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLF 252
            S +GAAYGT+KSG G+ +M VMRPE++M SI+PVVMAG++ IYGL++AV+I+  +N     Y  F
Sbjct:   26 SALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDGISLYRSF 90          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL2_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Schizosaccharomyces pombe GN=vma11 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.671e-16
Identity = 35/74 (47.30%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            SC+GA YGT+ +G G+ ++G  RPE++M S++PVVM+G++G+YGL+++V+I+ G       Y LF G+ HLS+G
Sbjct:   25 SCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLIA-GDMSPDNDYSLFSGFIHLSAG 97          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLF 252
            S MGAAYGT+KSG G+ +M VMRPEL+M SI+PVVMAG++ IYGL++AV+I+  +      Y  F
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTDGITLYRSF 90          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLF 252
            S MGAAYGT+KSG G+ +M VMRPEL+M SI+PVVMAG++ IYGL++AV+I+  +      Y  F
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTDGITLYRSF 90          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLF 252
            S +GAAYGT+KSG G+ +M VMRPE +M SI+PVVMAG++ IYGL++AV+I+  +N     Y  F
Sbjct:   26 SALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDISLYKSF 90          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_CANTR (V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 33/74 (44.59%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   58 SCMGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            +C GA+YGT+KSGVG+ +  V RP+L++ ++VPVVMAG++ IYGL+++V++S  ++ K     L+ G+  L +G
Sbjct:   24 TCFGASYGTAKSGVGICATSVTRPDLLVKNVVPVVMAGIIAIYGLVVSVLVSDSLSQKQA---LYTGFIQLGAG 94          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL2_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Neurospora crassa GN=vma-11 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.468e-14
Identity = 33/73 (45.21%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   67 GAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIIS--TGINHKAKSYYLFDGYAHLSSG 279
            GAAYGT+KSG+G+  +G  RP+L+M  ++PVVM+G++ +Y L++AV+I+   G     + Y LF+G+ HL+ G
Sbjct:   33 GAAYGTAKSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYALVVAVLIAQDLGPPGSGQHYSLFNGFMHLACG 105          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL_DICDI (V-type proton ATPase proteolipid subunit OS=Dictyostelium discoideum GN=vatP PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.209e-14
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   64 MGAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            MGAAYGT+K+ VG+++MGVM+P+L++ + +PV+ AGV+ IYGLII VI+  GI   A +Y L   +  L +G
Sbjct:   45 MGAAYGTAKASVGISNMGVMKPDLVIKAFIPVIFAGVIAIYGLIICVILVGGIKPNA-NYTLMKSFTDLGAG 115          
BLAST of CN184679 vs. ExPASy Swiss-Prot
Match: VATL1_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 1 OS=Caenorhabditis elegans GN=vha-1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.209e-14
Identity = 32/71 (45.07%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   67 GAAYGTSKSGVGVTSMGVMRPELMMNSIVPVVMAGVLGIYGLIIAVIISTGINHKAKSYYLFDGYAHLSSG 279
            G+AYGT+K+G G+ SM V RP+L+M +I+PVVMAG++ IYGL++AVI+S  +     +Y + + ++  + G
Sbjct:   40 GSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGG 110          
The following BLAST results are available for this feature:
BLAST of CN184679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_MAIZE7.671e-1695.35V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_BOVIN7.671e-1655.38V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_SCHPO7.671e-1647.30V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_RAT1.308e-1556.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE1.308e-1556.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HUMAN1.709e-1555.38V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_CANTR1.447e-1444.59V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_NEUCR2.468e-1445.21V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_DICDI4.209e-1450.00V-type proton ATPase proteolipid subunit OS=Dictyo... [more]
VATL1_CAEEL4.209e-1445.07V-type proton ATPase 16 kDa proteolipid subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005O03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184679 ID=CN184679; Name=CN184679; organism=Citrus sinensis; type=EST; length=280bp
GAGGATGAAACGGAACCGTTCTTCGGCTTCCTCGGCGCTGCCGCCGCCCT
TGTCTTCTCCTGTATGGGAGCTGCATATGGAACATCCAAGAGTGGTGTTG
GTGTGACGTCAATGGGTGTTATGAGGCCTGAGCTGATGATGAATTCGATT
GTGCCAGTTGTTATGGCTGGTGTTTTGGGTATATATGGTTTGATTATTGC
TGTTATTATCAGTACTGGGATTAACCACAAGGCCAAGTCATATTACCTTT
TTGATGGCTATGCTCATCTCTCCTCCGGTT
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