CN184677 | Citrus Genome Database

Overview


Name	CN184677
Unique Name	CN184677
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	598

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CN184677_ssr332	microsatellite	CN184677_ssr332:332..343.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12573	contig	Csv1_Contig12573:430..1027.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 79/102 (77.45%), Postives = 84/102 (82.35%), Query Frame = -1

Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPP+V ID              A+QPLPD+DDD  E
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE 221

[Close]

BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 79/102 (77.45%), Postives = 84/102 (82.35%), Query Frame = -1

Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPP+V ID              A+QPLPD+DDD  E
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE 221

[Close]

BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.247e-39
Identity = 80/102 (78.43%), Postives = 83/102 (81.37%), Query Frame = -1

Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE+ AL PPEV ID              A+QPLPD+DDD  E
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDLIE 221

[Close]

BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.247e-39
Identity = 80/102 (78.43%), Postives = 83/102 (81.37%), Query Frame = -1

Query:  293 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 598
            IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE+ AL PPEV ID              A+QPLPD+DDD  E
Sbjct:  120 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDLIE 221

[Close]

BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.357e-34
Identity = 71/98 (72.45%), Postives = 78/98 (79.59%), Query Frame = -1

Query:  305 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 598
            IVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+PNL FV SPALAPPEVQ+D              A+ PLPDEDD
Sbjct:  116 IVLCGNKVDVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLEFVASPALAPPEVQVDQQLLAQYQQEMNEAAAMPLPDEDD 213

[Close]

BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.858e-34
Identity = 70/98 (71.43%), Postives = 77/98 (78.57%), Query Frame = -1

Query:  305 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 598
            IVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:  120 IVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMHQYQQEMDQATALPLPDEDD 217

[Close]

BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.858e-34
Identity = 70/98 (71.43%), Postives = 77/98 (78.57%), Query Frame = -1

Query:  305 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 598
            IVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:  119 IVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 216

[Close]

BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.858e-34
Identity = 70/98 (71.43%), Postives = 77/98 (78.57%), Query Frame = -1

Query:  305 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 598
            IVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:  114 IVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 211

[Close]

BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.956e-34
Identity = 70/98 (71.43%), Postives = 77/98 (78.57%), Query Frame = -1

Query:  305 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 598
            IVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:  114 IVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLDFVASPALAPPEVQVDEQLMQQYQQEMERATALPLPDEDD 211

[Close]

BLAST of CN184677 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.995e-33
Identity = 69/98 (70.41%), Postives = 76/98 (77.55%), Query Frame = -1

Query:  305 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDD 598
            IVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPEVQ+D               + PLPDEDD
Sbjct:  114 IVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDEDD 211

The following BLAST results are available for this feature:

BLAST of CN184677 vs. ExPASy Swiss-Prot

BLAST of CN184677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51


Match Name	E-value	Identity	Description
RAN1_ORYSJ	7.080e-39	77.45	GTP-binding nuclear protein Ran-1 OS=Oryza sativa ...	[more]
RAN1_ORYSI	7.080e-39	77.45	GTP-binding nuclear protein Ran-1 OS=Oryza sativa ...	[more]
RAN2_ORYSJ	9.247e-39	78.43	GTP-binding nuclear protein Ran-2 OS=Oryza sativa ...	[more]
RAN2_ORYSI	9.247e-39	78.43	GTP-binding nuclear protein Ran-2 OS=Oryza sativa ...	[more]
SPI1_SCHPO	2.357e-34	72.45	GTP-binding nuclear protein spi1 OS=Schizosaccharo...	[more]
GSP2_YEAST	6.858e-34	71.43	GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom...	[more]
GSP1_YEAST	6.858e-34	71.43	GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom...	[more]
GSP1_CANGA	6.858e-34	71.43	GTP-binding nuclear protein GSP1/Ran OS=Candida gl...	[more]
GSP1_ASHGO	8.956e-34	71.43	GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos...	[more]
GSP1_CANAL	1.995e-33	70.41	GTP-binding nuclear protein GSP1/Ran OS=Candida al...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0005O02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184677 ID=CN184677; Name=CN184677; organism=Citrus sinensis; type=EST; length=598bp
TTTTGAATCCTCAATTATCAACACAATATATAAATGAACTAGGATATGGG
GCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGGTAAA
CAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGAATTA
GGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAATCCA
AAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATATTGA
ACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCGAAGG
CGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAGTTCA
GCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGGGAGC
AAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGTTTTC
TGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGCTGAG
ATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGC
TTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACAAT