CN184671

Overview
NameCN184671
Unique NameCN184671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig423 contig Csv1_Contig423:28..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_HUMAN (40S ribosomal protein SA OS=Homo sapiens GN=RPSA PE=1 SV=4)

HSP 1 Score: 261.151 bits (666), Expect = 4.019e-69
Identity = 125/191 (65.45%), Postives = 150/191 (78.53%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 659
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVM 198          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_DROPS (40S ribosomal protein SA OS=Drosophila pseudoobscura pseudoobscura GN=sta PE=3 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 4.019e-69
Identity = 128/193 (66.32%), Postives = 152/193 (78.76%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVN 665
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKLQ+AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+V+
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLQLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRTVEWPVVVD 200          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_DROPE (40S ribosomal protein SA OS=Drosophila persimilis GN=sta PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.019e-69
Identity = 128/193 (66.32%), Postives = 152/193 (78.76%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVN 665
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKLQ+AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+V+
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLQLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRTVEWPVVVD 200          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_DROAN (40S ribosomal protein SA OS=Drosophila ananassae GN=sta PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.019e-69
Identity = 127/193 (65.80%), Postives = 152/193 (78.76%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVN 665
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKLQ+AAR IVAI+N  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+V+
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLQLAARAIVAIDNASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVD 200          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_CERAE (40S ribosomal protein SA OS=Cercopithecus aethiops GN=RPSA PE=2 SV=3)

HSP 1 Score: 261.151 bits (666), Expect = 4.019e-69
Identity = 125/191 (65.45%), Postives = 150/191 (78.53%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 659
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVM 198          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_BOVIN (40S ribosomal protein SA OS=Bos taurus GN=RPSA PE=2 SV=4)

HSP 1 Score: 261.151 bits (666), Expect = 4.019e-69
Identity = 125/191 (65.45%), Postives = 150/191 (78.53%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 659
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVM 198          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_TRIAD (40S ribosomal protein SA OS=Trichoplax adhaerens GN=TRIADDRAFT_49917 PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.249e-69
Identity = 122/185 (65.95%), Postives = 150/185 (81.08%), Query Frame = 3
Query:  105 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 659
            D+  MLAA  HLGT N D+QME+YVF+RR DG++II+L +TWEKL +AAR+I +IENP D+ V SARPYGQRAVLKFAK+T A  IAGR TPGTFTNQ+Q ++ EPRLLI+TDPR DHQPI EA+  NIP IAFC+TDS +RY+D+GIP NNKG H+IG ++WLLAR VL++RGTI     W+ M
Sbjct:   14 DVSKMLAASAHLGTTNVDYQMEQYVFRRRTDGVHIIDLRQTWEKLLIAARIIASIENPADVCVLSARPYGQRAVLKFAKFTGASPIAGRFTPGTFTNQIQKAYREPRLLIVTDPRVDHQPITEASYVNIPVIAFCNTDSRLRYIDVGIPCNNKGAHAIGLMWWLLAREVLRLRGTISRDTDWEHM 198          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_LACBS (40S ribosomal protein S0 OS=Laccaria bicolor (strain S238N-H82) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.249e-69
Identity = 125/197 (63.45%), Postives = 157/197 (79.70%), Query Frame = 3
Query:   78 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVN 665
            P  L+  E +IQ++LAA+ H+GTKNCD QME YV+KRR DGI+I+N+GKTWEKL +AARVI A+ENP D+ V SARPYG RAVLK+A  T A AIAGR TPG+FTN +  SF EPRL+I+TDPR DHQ I+EA+  NIP IA CDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMV+
Sbjct:    6 PSVLAATEEEIQLLLAAQCHIGTKNCDKQMEPYVWKRRADGIHILNIGKTWEKLVLAARVIAAVENPNDVCVISARPYGHRAVLKYAANTGAQAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRVDHQAIREASYVNIPVIALCDTDAPLKFVDVAIPTNNKTRHSIGLIWWLLAREVLRLRGTIPRTSDGWNVMVD 202          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_DROVI (40S ribosomal protein SA OS=Drosophila virilis GN=sta PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.855e-69
Identity = 128/193 (66.32%), Postives = 151/193 (78.24%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVN 665
            LS KE DI  ML A  HLG++N +FQME+YVFKRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+V+
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVFKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRLRGTISRTTEWPVVVD 200          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_DROMO (40S ribosomal protein SA OS=Drosophila mojavensis GN=sta PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.855e-69
Identity = 128/193 (66.32%), Postives = 151/193 (78.24%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVN 665
            LS KE DI  ML A  HLG++N +FQME+YVFKRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+V+
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVFKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRLRGTISRTTEWPVVVD 200          
The following BLAST results are available for this feature:
BLAST of CN184671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_HUMAN4.019e-6965.4540S ribosomal protein SA OS=Homo sapiens GN=RPSA P... [more]
RSSA_DROPS4.019e-6966.3240S ribosomal protein SA OS=Drosophila pseudoobscu... [more]
RSSA_DROPE4.019e-6966.3240S ribosomal protein SA OS=Drosophila persimilis ... [more]
RSSA_DROAN4.019e-6965.8040S ribosomal protein SA OS=Drosophila ananassae G... [more]
RSSA_CERAE4.019e-6965.4540S ribosomal protein SA OS=Cercopithecus aethiops... [more]
RSSA_BOVIN4.019e-6965.4540S ribosomal protein SA OS=Bos taurus GN=RPSA PE=... [more]
RSSA_TRIAD5.249e-6965.9540S ribosomal protein SA OS=Trichoplax adhaerens G... [more]
RSSA_LACBS5.249e-6963.4540S ribosomal protein S0 OS=Laccaria bicolor (stra... [more]
RSSA_DROVI6.855e-6966.3240S ribosomal protein SA OS=Drosophila virilis GN=... [more]
RSSA_DROMO6.855e-6966.3240S ribosomal protein SA OS=Drosophila mojavensis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184671 ID=CN184671; Name=CN184671; organism=Citrus sinensis; type=EST; length=706bp
GAGGGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGGTTTTGAGAAATA
AAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTCTCAGAAAGA
GGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGGGTACTAAGA
ACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGAAACGATGGA
ATTTATATTATCAATCTTGGCAAGACTTGGGAGAAGCTACAGATGGCGGC
CAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTGTCCAATCAG
CTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTACACTCAC
GCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTACCAATCAAAT
GCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAGATCCACGAA
CAGACCATCAGCCAATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATT
GCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATATTGGCATTCC
TGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCTGGCTTTTGG
CTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCTGGCCACAAGTGG
GATGTGATGGTAAATAAATGTTAAATGTCTTCGAAAGACAATTTACTTTT
TAGATT
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