CN184671

Overview
NameCN184671
Unique NameCN184671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig423 contig Csv1_Contig423:28..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_MAGGR (40S ribosomal protein S0 OS=Magnaporthe grisea GN=RPS0 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.265e-66
Identity = 119/200 (59.50%), Postives = 151/200 (75.50%), Query Frame = 3
Query:   69 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVN 665
            A  P   +    DI+M+LAA+ H+G+KN    M  Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+H+IGC++W+LAR VL++RGTI      WDVMV+
Sbjct:    4 ANLPSVFNATSQDIEMLLAAQSHIGSKNLQVHMAPYLWKTRQDGVNVINVGKTWEKIVLAARIITAIDNPADVCVISARPYGQRAVLKFAAHTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHAIGCIWWMLAREVLRLRGTIYNRETPWDVMVD 203          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_ORNPR (40S ribosomal protein SA OS=Ornithodoros parkeri PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.210e-65
Identity = 116/193 (60.10%), Postives = 149/193 (77.20%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVN 665
            L  K+ D++  L A+ H+GT   DFQM++Y FKRR+DG+Y+I+L KTWEKL +AAR IVAIENP ++   S+RPYGQRAVLKFA +T A  IAGR TPGTFTNQ+Q +F EPRLL++ DPR DHQP+ EA+  NIP IAFC+TD+ +RYVD+ IP NNK +HSIG ++W+L R VL+MRG+I     WD MV+
Sbjct:    8 LGLKDDDVRRFLTAKTHIGTAQLDFQMQQYCFKRRSDGVYLIDLKKTWEKLLLAARAIVAIENPAEVCAISSRPYGQRAVLKFASFTGATPIAGRFTPGTFTNQIQAAFREPRLLVVCDPREDHQPVTEASYVNIPVIAFCNTDACLRYVDVAIPCNNKAQHSIGLMWWMLTREVLRMRGSIIREIPWDTMVD 200          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_AJECG (40S ribosomal protein S0 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.696e-65
Identity = 119/197 (60.41%), Postives = 151/197 (76.65%), Query Frame = 3
Query:   78 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVN 665
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I A++NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTDHQ IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDV+V+
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAVDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDHQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTLASRETEWDVVVD 203          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA2_SCHJY (40S ribosomal protein S0-B OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps0b PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.696e-65
Identity = 119/196 (60.71%), Postives = 148/196 (75.51%), Query Frame = 3
Query:   78 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVN 665
            P  L+  E DI+ +LAA  H+G+KN D +ME YV+KRR DG+ IIN+GKTWEK+ +AARVI  IENP D+ V SARPYG RAVLKFA +T A AIAGR TPG FTN +  ++ EPRL+++TDPR DHQ IKEA+  NIP IA CDTDSP+ +VDI IP NNKG  SIG ++WLLAR VL++RG +     WD+MV+
Sbjct:    8 PSVLNATEEDIKQLLAASCHIGSKNLDVRMENYVWKRRADGVNIINIGKTWEKIVLAARVIATIENPADVCVISARPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADHQAIKEASYVNIPVIALCDTDSPLAHVDIAIPTNNKGYKSIGLVWWLLAREVLRLRGALSRTAPWDIMVD 203          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_BOMMO (40S ribosomal protein SA OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.521e-65
Identity = 118/192 (61.46%), Postives = 146/192 (76.04%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 662
            L+  E D+  MLAA  HLG +N +FQME YV+KRR DG ++INL +TWEKL +AAR +VAIENP D+ V S+RP+GQRAVLKFA +T A  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI EA+  NIP IA C+TDSP+R+VDI IP N K  HSIG ++WLLAR VL++RG +    +WDV+V
Sbjct:    8 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV 199          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_AJEDS (40S ribosomal protein S0 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.521e-65
Identity = 118/188 (62.77%), Postives = 149/188 (79.26%), Query Frame = 3
Query:  105 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVN 665
            DI+M+LAA+ HLG+KN    M+ Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTDHQ IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGTI     +WDV+V+
Sbjct:   16 DIEMLLAAQCHLGSKNLQVHMDPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVCVISARPYGQRAVLKFAAHTGAAAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDHQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTIASRETEWDVVVD 203          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_AJEDR (40S ribosomal protein S0 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.521e-65
Identity = 118/188 (62.77%), Postives = 149/188 (79.26%), Query Frame = 3
Query:  105 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVN 665
            DI+M+LAA+ HLG+KN    M+ Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTDHQ IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGTI     +WDV+V+
Sbjct:   16 DIEMLLAAQCHLGSKNLQVHMDPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVCVISARPYGQRAVLKFAAHTGAAAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDHQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTIASRETEWDVVVD 203          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_SUBDO (40S ribosomal protein SA OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 118/191 (61.78%), Postives = 147/191 (76.96%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 659
            LS KE D+  +LAA  HLG  N D QM +YVFK + DG+ IIN+ KTWEKL +AARVI AIENP D+ V + +P+GQRA+LKFA YT A  IAGR TPGTFTNQ+Q +F EPRLLI++D R+DHQPI EAA  NIP IAFC+T+SP+RY+D+ IP NN GK+S+G ++WLL R VL++RGTI     W+VM
Sbjct:    8 LSMKEDDVTKLLAAGTHLGDSNVDIQMAQYVFKTKGDGVPIINVRKTWEKLLLAARVIAAIENPADVCVLANKPFGQRAILKFAHYTGAFPIAGRFTPGTFTNQIQKAFREPRLLIVSDARSDHQPITEAAYVNIPVIAFCNTNSPLRYIDVAIPCNNMGKNSLGLMWWLLCREVLRLRGTISRELPWEVM 198          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_NECH7 (40S ribosomal protein S0 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 118/197 (59.90%), Postives = 150/197 (76.14%), Query Frame = 3
Query:   78 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVN 665
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ ++N+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA  DTDSP  YVD+ IP NNKG+H+IGC++W+LAR VL++RGTI      WDVMV+
Sbjct:    7 PSVFNATSQDIEMLLAAQCHLGSKNLQVHMENYLWKTRADGVNVLNVGKTWEKIVLAARIIAAIDNPADVCVISARPYGQRAVLKFASHTGATAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALTDTDSPTEYVDVAIPTNNKGRHAIGCVWWMLAREVLRLRGTIYSRETPWDVMVD 203          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFU (40S ribosomal protein S0 OS=Aspergillus fumigatus GN=rps0 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 123/202 (60.89%), Postives = 153/202 (75.74%), Query Frame = 3
Query:   75 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVN 665
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AIENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+V+
Sbjct:    2 APSQLPPIFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIENPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLATRETEWDVVVD 203          
The following BLAST results are available for this feature:
BLAST of CN184671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_MAGGR9.265e-6659.5040S ribosomal protein S0 OS=Magnaporthe grisea GN=... [more]
RSSA_ORNPR1.210e-6560.1040S ribosomal protein SA OS=Ornithodoros parkeri P... [more]
RSSA_AJECG2.696e-6560.4140S ribosomal protein S0 OS=Ajellomyces capsulata ... [more]
RSSA2_SCHJY2.696e-6560.7140S ribosomal protein S0-B OS=Schizosaccharomyces ... [more]
RSSA_BOMMO3.521e-6561.4640S ribosomal protein SA OS=Bombyx mori PE=2 SV=1[more]
RSSA_AJEDS3.521e-6562.7740S ribosomal protein S0 OS=Ajellomyces dermatitid... [more]
RSSA_AJEDR3.521e-6562.7740S ribosomal protein S0 OS=Ajellomyces dermatitid... [more]
RSSA_SUBDO6.005e-6561.7840S ribosomal protein SA OS=Suberites domuncula PE... [more]
RSSA_NECH76.005e-6559.9040S ribosomal protein S0 OS=Nectria haematococca (... [more]
RSSA_ASPFU6.005e-6560.8940S ribosomal protein S0 OS=Aspergillus fumigatus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005N22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184671 ID=CN184671; Name=CN184671; organism=Citrus sinensis; type=EST; length=706bp
GAGGGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGGTTTTGAGAAATA
AAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTCTCAGAAAGA
GGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGGGTACTAAGA
ACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGAAACGATGGA
ATTTATATTATCAATCTTGGCAAGACTTGGGAGAAGCTACAGATGGCGGC
CAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTGTCCAATCAG
CTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTACACTCAC
GCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTACCAATCAAAT
GCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAGATCCACGAA
CAGACCATCAGCCAATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATT
GCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATATTGGCATTCC
TGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCTGGCTTTTGG
CTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCTGGCCACAAGTGG
GATGTGATGGTAAATAAATGTTAAATGTCTTCGAAAGACAATTTACTTTT
TAGATT
back to top