CN184671

Overview
NameCN184671
Unique NameCN184671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFC (40S ribosomal protein S0 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps0 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 123/202 (60.89%), Postives = 153/202 (75.74%), Query Frame = 3
Query:   75 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVN 665
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AIENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+V+
Sbjct:    2 APSQLPPIFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIENPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLATRETEWDVVVD 203          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_ANOGA (40S ribosomal protein SA OS=Anopheles gambiae GN=AGAP011777 PE=3 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 118/191 (61.78%), Postives = 151/191 (79.06%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 659
            LS KE D+  MLAA  H+G+ + +FQME+YV+KRR DG++IINLG+T+EKL +AAR I +IE PG++   S+RPYGQRAVLK+A YT A  IAGR TPG FTNQ+QT+F EPRLLI+TDP TDHQP+ EA+  NIP IAFC+TDSP+++VDI IP N K  HSIG ++W+LAR VL++RG I    +W+VM
Sbjct:    8 LSLKEDDVTKMLAATTHIGSTSVNFQMEQYVYKRRTDGVHIINLGRTYEKLLLAARCIASIEYPGEVFAISSRPYGQRAVLKYAHYTQATPIAGRFTPGAFTNQIQTTFREPRLLIVTDPLTDHQPVTEASYVNIPVIAFCNTDSPVKFVDIAIPCNTKSTHSIGLMWWMLAREVLRLRGKI-THDRWEVM 197          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_AEDAE (40S ribosomal protein SA OS=Aedes aegypti GN=AAEL008083 PE=2 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 118/190 (62.11%), Postives = 148/190 (77.89%), Query Frame = 3
Query:   87 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDV 656
            L+ K+ D+  MLAA  H+G+ + +FQME YV+KRR DG++IINLG+TWEKL +AAR I +IE PG++   S+RPYGQRAVLKFA YT A   AGR TPG FTNQ+Q +F EPRLLI+TDP TDHQP+ EA+  NIP IAFC+TDSP+++VDI IP NNK  HSIG ++WLLAR VL++RG I    KWD+
Sbjct:    8 LALKDDDVTKMLAATTHVGSTSVNFQMESYVYKRRPDGVHIINLGRTWEKLLLAARCIASIEYPGEVFAISSRPYGQRAVLKFAHYTEATPTAGRFTPGAFTNQIQPAFREPRLLIVTDPLTDHQPVTEASYVNIPVIAFCNTDSPLKFVDIAIPCNNKSPHSIGLMWWLLAREVLRLRGKI-THDKWDI 196          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_PLAKH (40S ribosomal protein SA OS=Plasmodium knowlesi (strain H) GN=PKH_061110 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.843e-65
Identity = 118/199 (59.30%), Postives = 151/199 (75.88%), Query Frame = 3
Query:   69 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVN 665
            +T  +  S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++I+NL KT+EKLQ+AAR+IVAI NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD QP+KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++GT+     W+VMV+
Sbjct:    2 STNKKVQSPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHILNLAKTYEKLQLAARIIVAINNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQPVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGTLPRSKPWNVMVD 200          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_NEUCR (40S ribosomal protein S0 OS=Neurospora crassa GN=rps-0 PE=3 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.024e-64
Identity = 119/200 (59.50%), Postives = 150/200 (75.00%), Query Frame = 3
Query:   69 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVN 665
            A  P   +    DI+ +LAA+ H+G+KN    M+ Y++K R DG+ I+N+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CD DSP  YVD+ IP NNKG+H+IGC++W+LAR VL++RGTI      WDVMV+
Sbjct:    4 ANLPSIFNATSTDIEQLLAAQCHIGSKNLGVHMQPYLWKTRADGVNILNVGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAQAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDADSPTEYVDVAIPTNNKGRHAIGCVWWMLAREVLRLRGTIYNRETPWDVMVD 203          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_ASPTN (40S ribosomal protein S0 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps0 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.024e-64
Identity = 120/197 (60.91%), Postives = 150/197 (76.14%), Query Frame = 3
Query:   78 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVN 665
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++WLLAR VL++RGT+     +WDV+V+
Sbjct:    7 PPMFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHSIGLVWWLLAREVLRLRGTLASREAEWDVVVD 203          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA1_SCHJY (40S ribosomal protein S0-A OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps0a PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.024e-64
Identity = 119/199 (59.80%), Postives = 150/199 (75.38%), Query Frame = 3
Query:   69 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVN 665
            A  P  L+  + DI+ +LAA  H+G+KN D +ME YV+KRR+DG++IIN+GKTWEK+ +AARVI  IENP D+ V S+RPYG RAVLKFA +T A AIAGR TPG FTN +  ++ EPRL+I TDPR D Q IKEA+  NIP I+ CDTDSP+ +VD+ IP NNKG  SIG ++WLLAR VL++RGTI     WDVMV+
Sbjct:    4 AGRPSILNATDDDIKQLLAASCHIGSKNLDVRMENYVWKRRSDGVHIINIGKTWEKIVLAARVIATIENPADVCVVSSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIATDPRADAQAIKEASYVNIPVISLCDTDSPLAHVDVAIPTNNKGYKSIGLVWWLLAREVLRLRGTISRTSPWDVMVD 202          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_PLAYO (40S ribosomal protein SA OS=Plasmodium yoelii yoelii GN=PY06059 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.338e-64
Identity = 119/192 (61.98%), Postives = 147/192 (76.56%), Query Frame = 3
Query:   90 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVN 665
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AARVIVA+ NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++GTI     WDVMV+
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARVIVAVSNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFIEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGTIPRSQAWDVMVD 199          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_NEOFI (40S ribosomal protein S0 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps0 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.338e-64
Identity = 119/197 (60.41%), Postives = 150/197 (76.14%), Query Frame = 3
Query:   78 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVN 665
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+V+
Sbjct:    7 PPMFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLATRETEWDVVVD 203          
BLAST of CN184671 vs. ExPASy Swiss-Prot
Match: RSSA_TALSN (40S ribosomal protein S0 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps0 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.747e-64
Identity = 119/197 (60.41%), Postives = 150/197 (76.14%), Query Frame = 3
Query:   78 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVN 665
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+V+
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVAVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLATRETEWDVVVD 203          
The following BLAST results are available for this feature:
BLAST of CN184671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_ASPFC6.005e-6560.8940S ribosomal protein S0 OS=Aspergillus fumigatus ... [more]
RSSA_ANOGA6.005e-6561.7840S ribosomal protein SA OS=Anopheles gambiae GN=A... [more]
RSSA_AEDAE6.005e-6562.1140S ribosomal protein SA OS=Aedes aegypti GN=AAEL0... [more]
RSSA_PLAKH7.843e-6559.3040S ribosomal protein SA OS=Plasmodium knowlesi (s... [more]
RSSA_NEUCR1.024e-6459.5040S ribosomal protein S0 OS=Neurospora crassa GN=r... [more]
RSSA_ASPTN1.024e-6460.9140S ribosomal protein S0 OS=Aspergillus terreus (s... [more]
RSSA1_SCHJY1.024e-6459.8040S ribosomal protein S0-A OS=Schizosaccharomyces ... [more]
RSSA_PLAYO1.338e-6461.9840S ribosomal protein SA OS=Plasmodium yoelii yoel... [more]
RSSA_NEOFI1.338e-6460.4140S ribosomal protein S0 OS=Neosartorya fischeri (... [more]
RSSA_TALSN1.747e-6460.4140S ribosomal protein S0 OS=Talaromyces stipitatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184671 ID=CN184671; Name=CN184671; organism=Citrus sinensis; type=EST; length=706bp
GAGGGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGGTTTTGAGAAATA
AAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTCTCAGAAAGA
GGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGGGTACTAAGA
ACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGAAACGATGGA
ATTTATATTATCAATCTTGGCAAGACTTGGGAGAAGCTACAGATGGCGGC
CAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTGTCCAATCAG
CTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTACACTCAC
GCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTACCAATCAAAT
GCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAGATCCACGAA
CAGACCATCAGCCAATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATT
GCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATATTGGCATTCC
TGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCTGGCTTTTGG
CTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCTGGCCACAAGTGG
GATGTGATGGTAAATAAATGTTAAATGTCTTCGAAAGACAATTTACTTTT
TAGATT
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