CN184659

Overview
NameCN184659
Unique NameCN184659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184659 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.969e-24
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = -1
Query:  254 QVSGSLAPCIGFLRSGGPIPMPCCNGVRSFNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 514
            QV+ +LAPC+ +LR+ GP+   CC GV++   +ARTT DRQ AC CLK AA +I  +NL  AAGLP  CGV+IPYKIS STDCSKV+
Sbjct:   29 QVTSNLAPCLAYLRNTGPLGR-CCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CN184659 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.969e-24
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = -1
Query:  257 QVSGSLAPCIGFLRSGGPIPMPCCNGVRSFNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 514
            QV G+LA CIGFL+ GG +P  CC GV++   ++RTT DR+  C+CLK AA ++  +N NNA  LPG CGV+IPYKISTST+C+ +
Sbjct:    5 QVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CN184659 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.796e-24
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = -1
Query:  254 VSGSLAPCIGFLRSGGPIPMPCCNGVRSFNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 511
            V+GSLAPC  +L  GG +P  CC GV++ N+ A+TTPDRQ AC C++  A+SI  LN + A+GLPG CGVSIPY IS ST+C+ ++
Sbjct:   30 VAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CN184659 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.330e-23
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = -1
Query:  254 VSGSLAPCIGFLRSGGPIPMPCCNGVRSFNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 511
            V+ SL+PC+G+L  GG +P PCC GV+  N  A+TTPDRQ AC CL+ AA+ + PSL    A+GLPG CGVSIPY ISTST+C+ ++
Sbjct:   30 VASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNPSL----ASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CN184659 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.869e-23
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  254 QVSGSLAPCIGFLRSGGPIPMPCCNGVRSFNAAARTTPDRQTACNCLKQAARSIPSLNLNNA--AGLPGACGVSIPYKISTSTDCSKVR 514
            QV   L  C+G+ R GG IP  CC GVR+ N  A+TTPDRQTACNCLK      PSL LN A  AG+PG CGV+IPY I   TDC+KVR
Sbjct:   27 QVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVN--PSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CN184659 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.869e-23
Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = -1
Query:  257 QVSGSLAPCIGFLRSGGPIPMPCCNGVRSFNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 514
            QV+ ++ PC+ + R G      CC+GVRS  AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:   30 QVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CN184659 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.869e-23
Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = -1
Query:  257 QVSGSLAPCIGFLRSGGPIPMPCCNGVRSFNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 514
            QV+ ++ PC+ + R G      CC+GVRS  AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:   30 QVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CN184659 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.619e-23
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = -1
Query:  254 QVSGSLAPCIGFLRSGGPIPMPCCNGVRSFNAAARTTPDRQTACNCLKQAARSIPSLNLNN--AAGLPGACGVSIPYKISTSTDCSKVR 514
            QV  +L PCI ++ +GG +   CC GVRS  + A+TT DRQ+ CNCLKQA   IP  N N   AAGLPG CGV+IPYKIS STDC  ++
Sbjct:   35 QVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CN184659 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.619e-23
Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = -1
Query:  257 QVSGSLAPCIGFLRSGGPIPMPCCNGVRSFNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 514
            QV+ +++PC+ + R G      CC+GVRS N+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DCS V
Sbjct:   32 QVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CN184659 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.619e-23
Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = -1
Query:  257 QVSGSLAPCIGFLRSGGPIPMPCCNGVRSFNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 514
            QV+ +++PC+ + R G      CC+GVRS N+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DCS V
Sbjct:   31 QVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
The following BLAST results are available for this feature:
BLAST of CN184659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP1_TOBAC5.969e-2459.77Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_PHAAU5.969e-2455.81Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP3_ARATH7.796e-2455.81Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP4_ARATH1.330e-2357.47Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
SCA_LILLO3.869e-2359.55Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP1_ORYSJ3.869e-2356.98Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI3.869e-2356.98Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP3_PRUDU8.619e-2356.18Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_ORYSI8.619e-2356.98Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ8.619e-2356.98Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184659 ID=CN184659; Name=CN184659; organism=Citrus sinensis; type=EST; length=514bp
TTTTTCCTTTTTTTTTTTTTTTAAACTGAACACAAGGCAAGATTTCCTTT
AATAAACAGAATAGACACAAACTGACGATGACATGAAAAGCAAAGACAAT
AAAACATAACATGAAACGAGGGCGCGAACGAGACTCGCAGTACAAAGTGT
AGAGAGAGACTCATAAATCGGACACAAAAATGTCCTTATTATTATACATT
TATTCTACTCCGTCAACTTAAACCTGAAAATCAACGGCCCAGATTCCTGT
TCACCTGACCTTAGAGCAGTCAGTGGAGGTGCTGATCTTGTAAGGAATGC
TGACTCCACAAGCTCCTGGAAGACCAGCAGCATTATTAAGGTTGAGGCTA
GGGATTGATCTGGCGGCTTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTC
AGGTGTGGTTCTGGCGGCAGCGTTGAAAGACCTGACGCCGTTGCAGCATG
GCATAGGTATAGGGCCGCCCGATCTCAAGAAACCGATGCATGGTGCCAAT
GAACCACTCACCTG
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