CN184656

Overview
NameCN184656
Unique NameCN184656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1955 contig Csv1_Contig1955:407..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E_DICDI (Eukaryotic translation initiation factor 4E OS=Dictyostelium discoideum GN=eif4e PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.741e-15
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = -1
Query:  196 GGKWTVIFPI-GKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHED-AKHDNRSKNRY 486
            GGKW V+     + D  WL +++A +GE FD  DEICG V N R   +KIS+WTK A +E A   +G   K++L+   TI +  HED  +    SKN Y
Sbjct:  150 GGKWFVMVKDKSRCDNQWLQSVMACVGETFDSSDEICGIVYNSRKNGDKISVWTKTAQDEKATRDVGNCLKKILEIDQTIQYTPHEDFIRSSKGSKNLY 248          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E_DROME (Eukaryotic translation initiation factor 4E OS=Drosophila melanogaster GN=eIF-4E PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.777e-14
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  193 GGKWTVIFPIGKS-----DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKEL--LDYSDTIGFIFHED--AKHDNRSKNRYT 486
            GG+W +   + KS     D  WL  LL +IGE FDH D+ICGAV+N+R +  KIS+WT + +NE A + IG + ++   L  ++++ +  H+D   K  +  K+ YT
Sbjct:  154 GGRWVIT--LNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT 258          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: I4E1B_HUMAN (Eukaryotic translation initiation factor 4E type 1B OS=Homo sapiens GN=EIF4E1B PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 6.752e-14
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  196 GGKWTVIFPIGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS--DTIGFIFHED--AKHDNRSKNRY 486
            GG+W V     +     D  WL TLL +IGE F+ H  E+CGAVVN+R + +KI++WT+ A N+A  + +G+ +KE L  S    IG+  H D   K ++ +KN++
Sbjct:  135 GGRWLVSLAKQQRHIELDRLWLETLLCLIGESFEEHSREVCGAVVNIRTKGDKIAVWTREAENQAGVLHVGRVYKERLGLSPKTIIGYQAHADTATKSNSLAKNKF 240          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E_XENLA (Eukaryotic translation initiation factor 4E OS=Xenopus laevis GN=eif4e PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.566e-13
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  196 GGKWTVIFPIGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKNRY 486
            GG+W +     +     D  WL TL+ +IGE FD H D++CGAVVNVRA+ +KI++WT    N+ A   IG+ +KE L       IG+  H D   K  + +KNR+
Sbjct:  106 GGRWLITLNKQQRRNDLDRFWLETLMCLIGESFDEHSDDVCGAVVNVRAKGDKIAIWTTEFENKDAVTHIGRVYKERLGLPAKVVIGYQSHADTATKSGSTTKNRF 211          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E_HUMAN (Eukaryotic translation initiation factor 4E OS=Homo sapiens GN=EIF4E PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.351e-13
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  196 GGKWTVIFPIGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRY 486
            GG+W +     +     D  WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KNR+
Sbjct:  110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRF 215          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E3_CAEEL (Eukaryotic translation initiation factor 4E-3 OS=Caenorhabditis elegans GN=ife-3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.351e-13
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = -1
Query:  226 GGKWTVIFPIGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDA 486
            GG+W V+    +     D  WL  L+A++GEQFD +GD ICGAVVNVR + +K+SLWT++A+ +   + IG+  K+ L   DT  + +  H+D+
Sbjct:  105 GGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDS 198          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E_RAT (Eukaryotic translation initiation factor 4E OS=Rattus norvegicus GN=Eif4e PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.376e-13
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  196 GGKWTVIFPIGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRY 486
            GG+W +     +     D  WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KNR+
Sbjct:  110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRF 215          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E_RABIT (Eukaryotic translation initiation factor 4E OS=Oryctolagus cuniculus GN=EIF4E PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.376e-13
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  196 GGKWTVIFPIGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRY 486
            GG+W +     +     D  WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KNR+
Sbjct:  110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRF 215          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E_MOUSE (Eukaryotic translation initiation factor 4E OS=Mus musculus GN=Eif4e PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.376e-13
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  196 GGKWTVIFPIGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRY 486
            GG+W +     +     D  WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KNR+
Sbjct:  110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRF 215          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E_BOVIN (Eukaryotic translation initiation factor 4E OS=Bos taurus GN=EIF4E PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 42/106 (39.62%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  196 GGKWTVIFPIGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRY 486
            GG+W +     +     D  WL T+L +IGE FD + D++CGAVVNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KNR+
Sbjct:  110 GGRWLITLNKQQRRSDLDRFWLETVLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRF 215          
The following BLAST results are available for this feature:
BLAST of CN184656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF4E_DICDI2.741e-1542.42Eukaryotic translation initiation factor 4E OS=Dic... [more]
IF4E_DROME1.777e-1438.32Eukaryotic translation initiation factor 4E OS=Dro... [more]
I4E1B_HUMAN6.752e-1439.62Eukaryotic translation initiation factor 4E type 1... [more]
IF4E_XENLA2.566e-1340.57Eukaryotic translation initiation factor 4E OS=Xen... [more]
IF4E_HUMAN3.351e-1340.57Eukaryotic translation initiation factor 4E OS=Hom... [more]
IF4E3_CAEEL3.351e-1341.49Eukaryotic translation initiation factor 4E-3 OS=C... [more]
IF4E_RAT4.376e-1340.57Eukaryotic translation initiation factor 4E OS=Rat... [more]
IF4E_RABIT4.376e-1340.57Eukaryotic translation initiation factor 4E OS=Ory... [more]
IF4E_MOUSE4.376e-1340.57Eukaryotic translation initiation factor 4E OS=Mus... [more]
IF4E_BOVIN7.465e-1339.62Eukaryotic translation initiation factor 4E OS=Bos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184656 ID=CN184656; Name=CN184656; organism=Citrus sinensis; type=EST; length=495bp
CTTTAAACTTCAAATATATTGCAAAGGTAAAATCAGCTACCGTTTTAAAG
AACCTTTTAAGAGGGTATTAGTACAGAAAACAGGAAATGGCAAAATGTTT
CAGAGCTCTATAACAACTAACAAGCCTACTGTCATCCAGAAAATACAATG
CATTTCCTGGGACTACACTGCAAAACTCTGTACAGTTTATGTTGTGTAGC
GATTCTTTGACCTGTTGTCATGCTTTGCATCCTCATGAAAGATGAACCCT
ATGGTGTCACTATAATCAAGCAACTCCTTCCACTGTTTCCCAATGCTCAT
CTGAGCAGCTTCATTTGAAGCATTCTTGGTCCACAGAGATATCTTTTCCT
GCCTAGCTCTAACATTTACAACTGCTCCACAGATTTCATCTCCATGATCA
AACTGTTCTCCAATCATTGCCAGCAACGTATACAGCCAAGAAGTATCAGA
TTTTCCTATAGGAAAGATGACTGTCCACTTCCCGCCATTAGCACA
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