CN184656

Overview
NameCN184656
Unique NameCN184656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1955 contig Csv1_Contig1955:407..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4EA_DANRE (Eukaryotic translation initiation factor 4E-1A OS=Danio rerio GN=eif4e1a PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.749e-13
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  196 GGKWTVIFPIGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRY 486
            GG+W +     +     D  WL TLL ++GE FD H D++CGAVVN+R + +KI++WT +  N+ A + IG+ +KE L       IG+  H D   K  + +KN++
Sbjct:  108 GGRWLITLSKQQRRADLDRFWLETLLCLVGEAFDDHSDDVCGAVVNIRTKGDKIAIWTTDYENKDAIVHIGRVYKERLGVPPKVIIGYQSHADTATKSGSTTKNKF 213          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E_APLCA (Eukaryotic translation initiation factor 4E OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12
Identity = 44/107 (41.12%), Postives = 58/107 (54.21%), Query Frame = -1
Query:  193 GGKWTVIFPIGKSDTS----WLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRYT 486
            GG+W +     +  T     WL TLL +IGE FD H +EICGA VN+R + +K+ LWT++A    A   IG + KE L       IGF  H D   K  +  KNR+T
Sbjct:  108 GGRWLINLNKTQRQTHLDDFWLETLLCLIGEGFDEHSEEICGATVNIRNKGDKLGLWTRDAQKTEATKKIGIKLKESLSVPPKIVIGFQAHSDTAGKAGSTVKNRFT 214          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E2_CAEEL (Eukaryotic translation initiation factor 4E-2 OS=Caenorhabditis elegans GN=ife-2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = -1
Query:  250 NGGKWTVIFPIGKS----DTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTI 489
            NGG+W +    G++    DT W   L+AMIGEQF D  + +CG V NVR +  KIS+WT N++++ A + IG   K++L+ +  I
Sbjct:   89 NGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCGIVCNVRGKGSKISVWTTNSADDGANLRIGGVLKQVLNNASMI 173          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: I4E1B_MOUSE (Eukaryotic translation initiation factor 4E type 1B OS=Mus musculus GN=Eif4e1b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  196 GGKWTVIFPIGKS------DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS--DTIGFIFHED-AKHDNRSKNRY 486
            GG+W  +  I K       D  WL TLL ++G  F+ +  E+CGAVVN+R +++KI+LWT  A ++A  M IG+ +KE L  S    IG+  H D A   N   N++
Sbjct:  138 GGRW--LLSIDKQLRHFELDRLWLETLLCLVGNCFEEYSREVCGAVVNIRTKRDKIALWTSEAEDKAGVMQIGQIYKERLGISTKTIIGYQAHADTAAKSNNLANKF 242          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E2_MOUSE (Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  265 NGGKWTVIFPIGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 489
            NGGKW +    G +   W   +LAM+GEQF  G+EICGAVV+VR +++ IS+W K AS++A    I    + +L+
Sbjct:  131 NGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLN 205          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E2_HUMAN (Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  265 NGGKWTVIFPIGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 489
            NGGKW +    G +   W   +LAM+GEQF  G+EICGAVV+VR +++ IS+W K AS++A    I    + +L+
Sbjct:  131 NGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLN 205          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E1_CAEEL (Eukaryotic translation initiation factor 4E-1 OS=Caenorhabditis elegans GN=ife-1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.839e-11
Identity = 42/109 (38.53%), Postives = 59/109 (54.13%), Query Frame = -1
Query:  208 ANGGKWTVIFPIGKS----DTSWLYTLLAMIGEQFDHGDE-ICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL-----DYS----DTIGFIFHEDAKHDNRS 492
            +NGG+W ++   GK+    D  WL  L+A++GEQF    E ICG V NVR +  KIS+WTK+ +++   M IG   KE L     D+S    D I +  HE  +    S
Sbjct:   83 SNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNVRGKGSKISVWTKDCNDDETNMRIGVVLKEKLMAASKDHSKPLFDVIRYEDHESCQKKTSS 191          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E5_CAEEL (Eukaryotic translation initiation factor 4E-5 OS=Caenorhabditis elegans GN=ife-5 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = -1
Query:  268 NGGKWTVIFPIGKS----DTSWLYTLLAMIGEQFDHGDE-ICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 489
            +GG+W +I   GK+    D  WL  LLA+IGEQF    E ICG V NVR +  KIS+WTKN +++   M IG   KE L
Sbjct:   81 DGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKL 159          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4EB_DANRE (Eukaryotic translation initiation factor 4E-1B OS=Danio rerio GN=eif4e1b PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.096e-11
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  196 GGKWTVIFPIGKSDTS----WLYTLLAMIGEQFDH-GDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRY 486
            GG+W +        T     WL TLL +IGE F     +ICG+V+N+RA+ +KI+LWT NA N      IG+++KE L       IG+  H D   K ++ +KN++
Sbjct:  107 GGRWLITLAKQHRHTELDHFWLETLLCLIGEGFSSFSRDICGSVINIRAKGDKIALWTSNAENCETVTYIGRKYKESLGLPQKLVIGYQAHADTATKSNSITKNKF 212          
BLAST of CN184656 vs. ExPASy Swiss-Prot
Match: IF4E4_CAEEL (Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = -1
Query:  190 GGKWTVIFPIGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD--YSDTIGFIFHEDAKHDNRSKNRYTT 486
            GGKW +    G S   W   L+A+IGEQF  GDE+CGAV ++R +++ ISLW +NA +      I +  + +L    +  + +  H+D   D +S  R+TT
Sbjct:  108 GGKWIIRLKKGLSTRIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHDDCLRD-QSSYRHTT 207          
The following BLAST results are available for this feature:
BLAST of CN184656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF4EA_DANRE9.749e-1337.74Eukaryotic translation initiation factor 4E-1A OS=... [more]
IF4E_APLCA1.663e-1241.12Eukaryotic translation initiation factor 4E OS=Apl... [more]
IF4E2_CAEEL1.078e-1141.18Eukaryotic translation initiation factor 4E-2 OS=C... [more]
I4E1B_MOUSE1.078e-1139.25Eukaryotic translation initiation factor 4E type 1... [more]
IF4E2_MOUSE1.408e-1144.00Eukaryotic translation initiation factor 4E type 2... [more]
IF4E2_HUMAN1.408e-1144.00Eukaryotic translation initiation factor 4E type 2... [more]
IF4E1_CAEEL1.839e-1138.53Eukaryotic translation initiation factor 4E-1 OS=C... [more]
IF4E5_CAEEL2.401e-1148.10Eukaryotic translation initiation factor 4E-5 OS=C... [more]
IF4EB_DANRE4.096e-1137.74Eukaryotic translation initiation factor 4E-1B OS=... [more]
IF4E4_CAEEL9.125e-1136.63Eukaryotic translation initiation factor 4E-4 OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184656 ID=CN184656; Name=CN184656; organism=Citrus sinensis; type=EST; length=495bp
CTTTAAACTTCAAATATATTGCAAAGGTAAAATCAGCTACCGTTTTAAAG
AACCTTTTAAGAGGGTATTAGTACAGAAAACAGGAAATGGCAAAATGTTT
CAGAGCTCTATAACAACTAACAAGCCTACTGTCATCCAGAAAATACAATG
CATTTCCTGGGACTACACTGCAAAACTCTGTACAGTTTATGTTGTGTAGC
GATTCTTTGACCTGTTGTCATGCTTTGCATCCTCATGAAAGATGAACCCT
ATGGTGTCACTATAATCAAGCAACTCCTTCCACTGTTTCCCAATGCTCAT
CTGAGCAGCTTCATTTGAAGCATTCTTGGTCCACAGAGATATCTTTTCCT
GCCTAGCTCTAACATTTACAACTGCTCCACAGATTTCATCTCCATGATCA
AACTGTTCTCCAATCATTGCCAGCAACGTATACAGCCAAGAAGTATCAGA
TTTTCCTATAGGAAAGATGACTGTCCACTTCCCGCCATTAGCACA
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